Variant report

Variant	rs12031853
Chromosome Location	chr1:58569699-58569700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1004297	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10889083	0.86[ASN][1000 genomes]
rs10889084	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1106367	0.83[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12035279	0.82[AMR][1000 genomes]
rs12041539	0.90[CHB][hapmap]
rs12058945	0.83[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1213764	0.83[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1213770	0.83[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1213771	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1320555	0.83[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1342876	0.91[MEX][hapmap];0.81[AMR][1000 genomes]
rs1359495	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1416347	0.95[MEX][hapmap];0.84[AMR][1000 genomes]
rs17116867	0.83[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2406589	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2764682	0.83[CHB][hapmap]
rs2764685	0.81[CHB][hapmap]
rs2764686	0.81[CHB][hapmap]
rs2764687	0.81[CHB][hapmap]
rs2788712	0.82[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs2806406	0.81[CHB][hapmap]
rs3121907	0.81[CHB][hapmap]
rs57821038	0.81[AMR][1000 genomes]
rs57918745	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58029039	0.84[ASN][1000 genomes]
rs59081310	0.84[ASN][1000 genomes]
rs60447453	0.81[AMR][1000 genomes]
rs7522031	0.83[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs821525	0.84[ASN][1000 genomes]
rs821526	0.84[ASN][1000 genomes]
rs821527	0.83[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs821528	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs884946	0.81[AMR][1000 genomes]
rs946310	0.83[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs946315	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58565000-58569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:58569600-58571600	Enhancers	Primary hematopoietic stem cells	blood
3	chr1:58569600-58571600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:58569600-58571600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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