The 2.0 version of rSNPBase

Variant report

Variant rs12033473
Chromosome Location chr1:85797852-85797853
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85790600-85800000 Enhancers HUVEC blood vessel
2 chr1:85791200-85798000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr1:85792200-85806000 Weak transcription Fetal Kidney kidney
4 chr1:85793200-85798600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:85793600-85798200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr1:85794000-85798200 Enhancers Breast Myoepithelial Primary Cells Breast
7 chr1:85794200-85798000 Enhancers Fetal Muscle Leg muscle
8 chr1:85794800-85798200 Enhancers Cortex derived primary cultured neurospheres brain
9 chr1:85795000-85798000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr1:85795200-85798600 Weak transcription Fetal Intestine Large intestine
11 chr1:85795600-85798400 Enhancers Primary B cells from peripheral blood blood
12 chr1:85795800-85798200 Enhancers Primary B cells from cord blood blood
13 chr1:85796200-85799800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:85796600-85798200 Enhancers NH-A brain
15 chr1:85796600-85798200 Enhancers NHLF lung
16 chr1:85796600-85798400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:85796600-85798600 Enhancers HSMMtube muscle
18 chr1:85796600-85799600 Enhancers Osteobl bone
19 chr1:85796600-85801800 Weak transcription Gastric stomach
20 chr1:85796600-85804000 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr1:85796600-85809400 Weak transcription Stomach Mucosa stomach
22 chr1:85796800-85798000 Weak transcription Esophagus oesophagus
23 chr1:85796800-85798200 Weak transcription H1 Cell Line embryonic stem cell
24 chr1:85796800-85798200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:85796800-85798400 Enhancers Hela-S3 cervix
26 chr1:85796800-85798600 Weak transcription Ovary ovary
27 chr1:85796800-85798600 Enhancers NHDF-Ad bronchial
28 chr1:85796800-85799600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:85796800-85804200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr1:85796800-85805400 Weak transcription Aorta Aorta
31 chr1:85796800-85805400 Weak transcription HepG2 liver
32 chr1:85796800-85806400 Weak transcription Small Intestine intestine
33 chr1:85796800-85809600 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr1:85797000-85798200 Weak transcription Fetal Stomach stomach
35 chr1:85797000-85798200 Weak transcription Psoas Muscle Psoas
36 chr1:85797000-85798400 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr1:85797000-85800600 Weak transcription HMEC breast
38 chr1:85797000-85805000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:85797400-85798000 Enhancers Muscle Satellite Cultured Cells --
40 chr1:85797400-85798000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:85797400-85798800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:85797400-85799000 Enhancers Fetal Muscle Trunk muscle
43 chr1:85797400-85800200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:85797600-85798000 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr1:85797600-85798200 Enhancers Lung lung
46 chr1:85797600-85798200 Enhancers Spleen Spleen
47 chr1:85797600-85798400 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr1:85797600-85798800 Enhancers Skeletal Muscle Female skeletal muscle
49 chr1:85797600-85799200 Genic enhancers HSMM muscle
50 chr1:85797600-85800400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015