Variant report

Variant	rs12035017
Chromosome Location	chr1:76685705-76685706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124171	0.87[LWK][hapmap]
rs12048928	0.82[JPT][hapmap]
rs12563461	0.81[AMR][1000 genomes]
rs1486932	0.87[LWK][hapmap];0.84[MKK][hapmap]
rs1486934	0.82[JPT][hapmap]
rs1486935	0.82[JPT][hapmap]
rs2783985	0.82[JPT][hapmap]
rs2952435	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3011991	0.83[ASN][1000 genomes]
rs490570	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4949698	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs512082	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs566665	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7556363	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801297	chr1:76673530-76686142	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12035017	FPGT	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76683800-76686800	Enhancers	Fetal Thymus	thymus
2	chr1:76684000-76686600	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:76685200-76685800	Enhancers	Thymus	Thymus
4	chr1:76685400-76686600	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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