Variant report

Variant	rs12037781
Chromosome Location	chr1:172852118-172852119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10737295	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912487	1.00[ASN][1000 genomes]
rs17371133	0.82[ASN][1000 genomes]
rs1988983	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422257	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4145469	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs4916282	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5028523	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61828367	0.82[ASN][1000 genomes]
rs6425162	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6664499	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672265	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673011	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6688532	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs7527986	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7528161	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7539319	0.96[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172840600-172855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172850600-172856800	Enhancers	HUVEC	blood vessel
3	chr1:172851600-172852600	Enhancers	Osteobl	bone
4	chr1:172851600-172853000	Enhancers	Psoas Muscle	Psoas
5	chr1:172851800-172852400	Enhancers	Dnd41	blood
6	chr1:172851800-172853600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:172852000-172852600	Bivalent Enhancer	GM12878-XiMat	blood
8	chr1:172852000-172853200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:172852000-172853200	Enhancers	NHDF-Ad	bronchial
10	chr1:172852000-172853400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:172852000-172853600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:172852000-172855600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:172852000-172855600	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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