Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10443262	0.92[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs10889897	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11209709	1.00[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11209710	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs11209711	1.00[CEU][hapmap];0.83[JPT][hapmap];0.94[YRI][hapmap]
rs12032742	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12046641	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1325950	0.92[ASN][1000 genomes]
rs1327460	0.84[CHB][hapmap]
rs1409161	1.00[CEU][hapmap]
rs1409166	0.80[EUR][1000 genomes]
rs1409981	0.84[CEU][hapmap]
rs1409985	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs1409989	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1536537	0.86[ASN][1000 genomes]
rs1576056	0.93[ASN][1000 genomes]
rs17541597	1.00[CEU][hapmap]
rs2225025	0.92[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs4650094	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7530345	0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[ASN][1000 genomes]
rs7533733	0.83[CHB][hapmap];0.84[ASN][1000 genomes]
rs7540868	0.85[ASN][1000 genomes]
rs942977	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv871604	chr1:71353104-71361673	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12039590	PTGER3	cis	parietal	SCAN
rs12039590	ADCY5	trans	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71358000-71361000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:71358200-71361400	Weak transcription	K562	blood
3	chr1:71359200-71360800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:71359200-71361400	Weak transcription	NHDF-Ad	bronchial
5	chr1:71359200-71361600	Weak transcription	Adipose Nuclei	Adipose
6	chr1:71360000-71360600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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