Variant report

Variant	rs12041014
Chromosome Location	chr1:215260645-215260646
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10746453	0.81[EUR][1000 genomes]
rs10864149	0.81[EUR][1000 genomes]
rs10864151	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120481	0.81[EUR][1000 genomes]
rs11120484	0.91[ASN][1000 genomes]
rs11120504	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1157492	0.81[EUR][1000 genomes]
rs11586565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802959	0.81[EUR][1000 genomes]
rs12038773	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1349674	0.81[EUR][1000 genomes]
rs1377183	0.81[EUR][1000 genomes]
rs1452636	0.81[EUR][1000 genomes]
rs1901623	0.81[EUR][1000 genomes]
rs2363561	0.91[ASN][1000 genomes]
rs2363563	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2885816	0.96[ASN][1000 genomes]
rs4655271	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4655272	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215257800-215260800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:215258200-215277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:215258400-215261000	Weak transcription	Osteobl	bone
4	chr1:215258400-215265000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:215258400-215267400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:215258400-215277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:215258800-215261200	Weak transcription	NHLF	lung
8	chr1:215259600-215261400	Enhancers	Fetal Brain Male	brain
9	chr1:215259800-215261000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:215260200-215261400	Strong transcription	NHDF-Ad	bronchial
11	chr1:215260200-215262800	Enhancers	HUVEC	blood vessel
12	chr1:215260200-215265600	Weak transcription	Gastric	stomach
13	chr1:215260400-215261000	Active TSS	Fetal Brain Female	brain
14	chr1:215260600-215261000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links