Variant report

Variant	rs12041247
Chromosome Location	chr1:71367585-71367586
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10889891	0.80[ASN][1000 genomes]
rs11209705	0.82[ASN][1000 genomes]
rs11803673	0.80[ASN][1000 genomes]
rs11810467	0.82[ASN][1000 genomes]
rs12023582	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12026099	0.83[ASN][1000 genomes]
rs12026456	0.82[ASN][1000 genomes]
rs12028563	1.00[EUR][1000 genomes]
rs12034333	0.82[ASN][1000 genomes]
rs12035395	1.00[JPT][hapmap]
rs12040186	0.82[ASN][1000 genomes]
rs12048245	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12048393	1.00[CHB][hapmap]
rs12049445	0.82[ASN][1000 genomes]
rs12141116	1.00[CHB][hapmap]
rs1591386	1.00[CHB][hapmap]
rs17131422	1.00[EUR][1000 genomes]
rs17131473	0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs17131476	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs17131485	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17131488	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2068652	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2152126	1.00[CHB][hapmap]
rs2782786	1.00[CHB][hapmap]
rs2782787	1.00[CHB][hapmap]
rs2782788	1.00[CHB][hapmap]
rs34087524	0.84[ASN][1000 genomes]
rs34745168	0.84[ASN][1000 genomes]
rs35615554	0.84[ASN][1000 genomes]
rs36021131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55884889	0.89[ASN][1000 genomes]
rs6661453	0.83[ASN][1000 genomes]
rs6684573	0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs74086786	0.81[ASN][1000 genomes]
rs74086973	0.85[ASN][1000 genomes]
rs74086974	0.82[ASN][1000 genomes]
rs74086976	0.82[ASN][1000 genomes]
rs74086980	0.82[ASN][1000 genomes]
rs74086985	0.85[ASN][1000 genomes]
rs74086993	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv461840	chr1:71364105-71468493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv546471	chr1:71364105-71468493	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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