The 2.0 version of rSNPBase

Variant report

Variant rs12042485
Chromosome Location chr1:85792954-85792955
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85774600-85794800 Weak transcription Spleen Spleen
2 chr1:85774800-85794200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:85780000-85795800 Weak transcription Rectal Smooth Muscle rectum
4 chr1:85780200-85795800 Weak transcription Stomach Smooth Muscle stomach
5 chr1:85780400-85793200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:85780400-85795800 Weak transcription Gastric stomach
7 chr1:85782400-85795000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr1:85782800-85794600 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr1:85783000-85795800 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:85783200-85795800 Weak transcription Aorta Aorta
11 chr1:85784000-85794600 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:85784600-85794600 Weak transcription Fetal Lung lung
13 chr1:85787200-85793600 Weak transcription HSMMtube muscle
14 chr1:85788600-85797400 Weak transcription Fetal Muscle Trunk muscle
15 chr1:85789400-85795800 Weak transcription Liver Liver
16 chr1:85789600-85794600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:85789800-85795800 Weak transcription Fetal Stomach stomach
18 chr1:85789800-85795800 Weak transcription Lung lung
19 chr1:85790000-85795600 Enhancers NHDF-Ad bronchial
20 chr1:85790200-85795200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:85790400-85793800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:85790400-85795600 Weak transcription Brain Germinal Matrix brain
23 chr1:85790400-85796200 Enhancers ES-I3 Cell Line embryonic stem cell
24 chr1:85790400-85797000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:85790600-85794200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:85790600-85794400 Enhancers Hela-S3 cervix
27 chr1:85790600-85800000 Enhancers HUVEC blood vessel
28 chr1:85790800-85793800 Enhancers HSMM muscle
29 chr1:85790800-85794400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:85790800-85794600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr1:85791000-85793000 Enhancers Osteobl bone
32 chr1:85791000-85793600 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr1:85791000-85794200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
34 chr1:85791000-85794200 Weak transcription Fetal Muscle Leg muscle
35 chr1:85791000-85794600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:85791000-85796800 Enhancers HepG2 liver
37 chr1:85791200-85794000 Weak transcription Left Ventricle heart
38 chr1:85791200-85794200 Weak transcription H9 Cell Line embryonic stem cell
39 chr1:85791200-85794800 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr1:85791200-85798000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
41 chr1:85791400-85793200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:85791400-85794400 Weak transcription HUES64 Cell Line embryonic stem cell
43 chr1:85791400-85794600 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr1:85791400-85794800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr1:85791400-85797400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:85791800-85794600 Weak transcription Fetal Intestine Large intestine
47 chr1:85792000-85793200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:85792000-85793400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr1:85792000-85793600 Weak transcription NH-A brain
50 chr1:85792000-85794400 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015