The 2.0 version of rSNPBase

Variant report

Variant rs12043169
Chromosome Location chr1:220930399-220930400
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220922400-220932200 Weak transcription HSMMtube muscle
2 chr1:220922600-220931000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr1:220922600-220943800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:220922600-220946400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr1:220922800-220959600 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:220922800-220959600 Weak transcription Placenta Amnion Placenta Amnion
7 chr1:220923200-220930400 Weak transcription Spleen Spleen
8 chr1:220923200-220948000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:220924200-220931000 Weak transcription Brain Inferior Temporal Lobe brain
10 chr1:220924200-220936000 Weak transcription Primary neutrophils fromperipheralblood blood
11 chr1:220924600-220936800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:220924600-220944000 Weak transcription Brain Hippocampus Middle brain
13 chr1:220924800-220931200 Weak transcription H1 Cell Line embryonic stem cell
14 chr1:220924800-220945600 Weak transcription Osteobl bone
15 chr1:220925000-220946000 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:220925000-220959400 Weak transcription Brain Angular Gyrus brain
17 chr1:220925200-220942000 Weak transcription Rectal Smooth Muscle rectum
18 chr1:220925200-220943400 Weak transcription Brain Cingulate Gyrus brain
19 chr1:220925400-220950200 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr1:220925800-220931800 Strong transcription Fetal Intestine Small intestine
21 chr1:220925800-220938400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr1:220927000-220933000 Weak transcription Right Ventricle heart
23 chr1:220927200-220933200 Weak transcription Small Intestine intestine
24 chr1:220927400-220930400 Strong transcription Stomach Smooth Muscle stomach
25 chr1:220927600-220930800 Strong transcription Rectal Mucosa Donor 29 rectum
26 chr1:220927600-220931200 Strong transcription Duodenum Mucosa Duodenum
27 chr1:220927600-220931200 Strong transcription Fetal Muscle Leg muscle
28 chr1:220927600-220931200 Strong transcription Hela-S3 cervix
29 chr1:220927600-220934400 Weak transcription Stomach Mucosa stomach
30 chr1:220927800-220930800 Strong transcription Gastric stomach
31 chr1:220927800-220931000 Strong transcription Sigmoid Colon Sigmoid Colon
32 chr1:220927800-220931000 Strong transcription Skeletal Muscle Male skeletal muscle
33 chr1:220927800-220931200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:220927800-220931200 Strong transcription Fetal Intestine Large intestine
35 chr1:220927800-220931200 Strong transcription Pancreas Pancrea
36 chr1:220927800-220931400 Strong transcription Fetal Adrenal Gland Adrenal Gland
37 chr1:220927800-220931600 Strong transcription Lung lung
38 chr1:220927800-220938600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:220928000-220931000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr1:220928000-220931200 Strong transcription Duodenum Smooth Muscle Duodenum
41 chr1:220928000-220931200 Strong transcription Fetal Muscle Trunk muscle
42 chr1:220928000-220931200 Strong transcription Ovary ovary
43 chr1:220928000-220931200 Strong transcription Skeletal Muscle Female skeletal muscle
44 chr1:220928000-220933600 Strong transcription Fetal Stomach stomach
45 chr1:220928200-220930800 Strong transcription Cortex derived primary cultured neurospheres brain
46 chr1:220928200-220931200 Strong transcription HUVEC blood vessel
47 chr1:220928400-220930600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr1:220928400-220930600 Strong transcription Aorta Aorta
49 chr1:220928400-220930800 Strong transcription iPS-20b Cell Line embryonic stem cell
50 chr1:220928400-220931200 Strong transcription Left Ventricle heart

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Last update: Aug 31, 2015