Variant report

Variant	rs12043297
Chromosome Location	chr1:220569967-220569968
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11581752	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11584853	0.88[ASN][1000 genomes]
rs12041789	0.81[EUR][1000 genomes]
rs1338770	0.84[EUR][1000 genomes]
rs1578045	0.82[AFR][1000 genomes]
rs1578046	0.82[AFR][1000 genomes]
rs1578048	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17568324	0.84[EUR][1000 genomes]
rs17568345	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2185157	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6663859	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369301	chr1:220569629-220572627	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220565400-220583000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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