Variant report
| Variant | rs1204570 |
|---|---|
| Chromosome Location | chr7:126594857-126594858 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:48)
| rs_ID | r2[population] |
|---|---|
| rs1003037 | 1.00[JPT][hapmap] |
| rs10229548 | 1.00[CHB][hapmap] |
| rs10243157 | 1.00[CHB][hapmap] |
| rs10246394 | 1.00[CHB][hapmap] |
| rs10252394 | 1.00[CHB][hapmap] |
| rs10267279 | 1.00[CHB][hapmap] |
| rs10267858 | 1.00[CHB][hapmap] |
| rs1154326 | 1.00[JPT][hapmap] |
| rs1154333 | 1.00[JPT][hapmap] |
| rs1155655 | 1.00[CHB][hapmap] |
| rs1155657 | 1.00[JPT][hapmap] |
| rs1204553 | 1.00[JPT][hapmap] |
| rs1204554 | 1.00[JPT][hapmap] |
| rs1204556 | 1.00[JPT][hapmap] |
| rs1204558 | 1.00[JPT][hapmap] |
| rs1204559 | 1.00[JPT][hapmap] |
| rs1204560 | 1.00[JPT][hapmap] |
| rs1204561 | 1.00[JPT][hapmap] |
| rs1204562 | 1.00[JPT][hapmap] |
| rs1204564 | 0.94[CEU][hapmap] |
| rs1204565 | 1.00[JPT][hapmap] |
| rs1204566 | 1.00[JPT][hapmap] |
| rs1204568 | 1.00[JPT][hapmap] |
| rs1204572 | 1.00[JPT][hapmap] |
| rs1204574 | 1.00[JPT][hapmap] |
| rs1204582 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1204585 | 1.00[JPT][hapmap] |
| rs1204589 | 1.00[JPT][hapmap] |
| rs1204590 | 1.00[JPT][hapmap] |
| rs1204595 | 1.00[JPT][hapmap] |
| rs1419457 | 1.00[JPT][hapmap] |
| rs1419463 | 1.00[JPT][hapmap] |
| rs1419466 | 1.00[JPT][hapmap] |
| rs1419509 | 1.00[CHB][hapmap] |
| rs17864092 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2021162 | 1.00[JPT][hapmap] |
| rs2109740 | 1.00[JPT][hapmap] |
| rs2518948 | 1.00[JPT][hapmap] |
| rs2518956 | 1.00[JPT][hapmap] |
| rs2518959 | 1.00[JPT][hapmap] |
| rs2535928 | 1.00[JPT][hapmap] |
| rs2535937 | 1.00[JPT][hapmap] |
| rs2896388 | 1.00[JPT][hapmap] |
| rs6946530 | 1.00[CHB][hapmap] |
| rs916614 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs971789 | 1.00[CHB][hapmap] |
| rs974441 | 1.00[CHB][hapmap] |
| rs994783 | 0.94[CEU][hapmap];1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv608378 | chr7:126570120-126597132 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 6 | esv3333689 | chr7:126594620-126594907 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:126594600-126595000 | Weak transcription | Fetal Kidney | kidney |
