The 2.0 version of rSNPBase

Variant report

Variant rs12046433
Chromosome Location chr1:85832752-85832753
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85809200-85838400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:85814200-85839600 Weak transcription Left Ventricle heart
3 chr1:85816000-85839600 Weak transcription Pancreas Pancrea
4 chr1:85816600-85836800 Weak transcription Fetal Muscle Trunk muscle
5 chr1:85823200-85836800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:85824400-85833800 Weak transcription Fetal Intestine Small intestine
7 chr1:85825000-85839000 Weak transcription Aorta Aorta
8 chr1:85826200-85838800 Weak transcription Hela-S3 cervix
9 chr1:85827000-85833800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr1:85827000-85834600 Enhancers NHDF-Ad bronchial
11 chr1:85827000-85837800 Weak transcription Rectal Smooth Muscle rectum
12 chr1:85827200-85836800 Weak transcription Adipose Nuclei Adipose
13 chr1:85827200-85839000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr1:85827400-85839400 Weak transcription Fetal Intestine Large intestine
15 chr1:85827600-85836800 Weak transcription HepG2 liver
16 chr1:85828000-85838800 Weak transcription Colon Smooth Muscle Colon
17 chr1:85829400-85836800 Weak transcription Brain Anterior Caudate brain
18 chr1:85829400-85838400 Weak transcription Fetal Kidney kidney
19 chr1:85829600-85839000 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr1:85829800-85833200 Weak transcription Fetal Stomach stomach
21 chr1:85830000-85835600 Weak transcription Psoas Muscle Psoas
22 chr1:85830400-85833600 Genic enhancers Osteobl bone
23 chr1:85830800-85833000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:85830800-85834200 Genic enhancers HSMM muscle
25 chr1:85831000-85832800 Enhancers Muscle Satellite Cultured Cells --
26 chr1:85831200-85833200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:85831400-85833000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:85831400-85834600 Enhancers HUVEC blood vessel
29 chr1:85831600-85832800 Enhancers ES-I3 Cell Line embryonic stem cell
30 chr1:85831600-85832800 Enhancers HSMMtube muscle
31 chr1:85831600-85833000 Enhancers NHEK skin
32 chr1:85831600-85833400 Enhancers NH-A brain
33 chr1:85831600-85834400 Enhancers NHLF lung
34 chr1:85831600-85836800 Weak transcription Small Intestine intestine
35 chr1:85831800-85832800 Enhancers A549 lung
36 chr1:85831800-85833200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:85831800-85836800 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:85832000-85832800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:85832000-85833200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:85832200-85832800 Enhancers HMEC breast
41 chr1:85832200-85836600 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:85832400-85832800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:85832400-85833000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
44 chr1:85832400-85834400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:85832600-85833200 Enhancers Fetal Muscle Leg muscle
46 chr1:85832600-85833400 Enhancers Cortex derived primary cultured neurospheres brain
47 chr1:85832600-85834000 Weak transcription Liver Liver
48 chr1:85832600-85835600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015