Variant report

Variant	rs12047297
Chromosome Location	chr1:220684352-220684353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220671675..220674982-chr1:220683924..220687584,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10495149	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10746403	0.91[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.90[TSI][hapmap]
rs10779412	0.80[CEU][hapmap];0.87[CHB][hapmap]
rs10779414	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs10863557	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118564	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11118565	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11118566	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118567	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11118570	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11118573	0.85[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs11118576	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs11588721	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046244	0.83[JPT][hapmap]
rs12408540	0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12737023	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12753927	0.85[AMR][1000 genomes]
rs17007855	0.85[AMR][1000 genomes]
rs1933001	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1933007	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095669	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2152836	0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.88[TSI][hapmap]
rs2244448	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs2378400	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2589581	0.82[EUR][1000 genomes]
rs2589586	0.91[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2589589	0.91[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2786598	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786606	0.91[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs2786610	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2786617	0.87[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs2889895	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs35287074	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35327085	0.85[AMR][1000 genomes]
rs3753873	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3753874	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3767319	0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.90[TSI][hapmap]
rs3767320	0.84[CEU][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap]
rs3767321	0.87[CHB][hapmap]
rs3767323	0.80[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs3820347	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3860322	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3899315	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs4120669	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs4846326	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4846650	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4846653	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4846655	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6541154	0.84[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs6675368	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6695583	0.87[CHB][hapmap];0.81[CHD][hapmap];0.90[TSI][hapmap]
rs7532064	0.80[AMR][1000 genomes]
rs7555225	0.83[JPT][hapmap]
rs7556280	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9430949	0.85[CEU][hapmap];0.95[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12047297	C1orf115	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220683200-220689800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:220684000-220684800	Enhancers	NHEK	skin
3	chr1:220684000-220685800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:220684000-220685800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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