Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71178762..71180543-chr1:71512926..71515342,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTH-1	chr1:71178812-71178990	ENSG00000229051
2	lnc-CTH-1	chr1:71178812-71178990	XLOC_000246

Variant related genes	Relation type
ENSG00000235079	Chromatin interaction
ENSG00000050628	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10493478	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12023582	0.93[CHB][hapmap]
rs12028563	1.00[ASN][1000 genomes]
rs12041247	1.00[CHB][hapmap]
rs12048245	1.00[CHB][hapmap]
rs12127573	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12141116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1591386	1.00[CHB][hapmap]
rs17131473	0.93[CHB][hapmap]
rs17131476	0.82[CHB][hapmap]
rs17131485	0.93[CHB][hapmap]
rs17131488	1.00[CHB][hapmap]
rs2068652	0.93[CHB][hapmap]
rs2152126	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2782770	0.84[EUR][1000 genomes]
rs2782786	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs2782787	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs2782788	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs2820513	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs61778712	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6685675	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs950031	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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