Variant report

Variant	rs12048541
Chromosome Location	chr1:220686098-220686099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220685188..220687607-chr1:220701251..220702944,2	MCF-7	breast:
2	chr1:220684697..220687994-chr1:220690391..220694030,3	MCF-7	breast:
3	chr1:220678963..220681754-chr1:220685262..220688386,3	K562	blood:
4	chr1:220685173..220687805-chr1:220691709..220694895,3	MCF-7	breast:
5	chr1:220671675..220674982-chr1:220683924..220687584,3	MCF-7	breast:
6	chr1:220680020..220681754-chr1:220685262..220687003,2	K562	blood:

Variant related genes	Relation type
ENSG00000116141	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1073460	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10779408	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10779409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118563	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12405059	0.86[JPT][hapmap]
rs12568419	0.87[JPT][hapmap]
rs12753927	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12758833	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17007855	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17007885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1933002	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1933008	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2253641	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs2378401	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs2589578	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2589588	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2786601	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2786604	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs2786607	0.87[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs2786609	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2786610	0.82[AMR][1000 genomes]
rs2786613	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2786619	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2889928	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2993209	0.86[EUR][1000 genomes]
rs2994527	0.80[EUR][1000 genomes]
rs35287074	0.85[AMR][1000 genomes]
rs35327085	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35553664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3737296	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs3753873	0.85[AMR][1000 genomes]
rs4011894	0.88[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs4846657	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs6541155	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs6699189	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs6699196	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7514431	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs7532064	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9431262	0.90[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220683200-220689800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:220685200-220689400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:220685400-220686200	Enhancers	NHEK	skin
4	chr1:220685400-220687000	Weak transcription	Placenta	Placenta
5	chr1:220685600-220687800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:220685600-220689000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:220685600-220689000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:220685600-220689200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:220685800-220686800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:220685800-220687400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:220685800-220689400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:220686000-220687200	Weak transcription	HMEC	breast

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