Variant report

Variant	rs12049445
Chromosome Location	chr1:71305367-71305368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10518349	0.83[EUR][1000 genomes]
rs10889891	0.98[ASN][1000 genomes]
rs10889892	0.93[ASN][1000 genomes]
rs11209705	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11803673	0.98[ASN][1000 genomes]
rs11810467	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12023582	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12026099	0.88[ASN][1000 genomes]
rs12026456	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12034333	0.89[ASN][1000 genomes]
rs12035395	0.89[JPT][hapmap]
rs12040186	1.00[ASN][1000 genomes]
rs12041247	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12048245	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12048393	0.93[CHB][hapmap]
rs12049500	0.87[ASN][1000 genomes]
rs12128044	0.85[EUR][1000 genomes]
rs12141116	0.92[CHB][hapmap]
rs1335002	0.85[ASN][1000 genomes]
rs1409983	0.85[EUR][1000 genomes]
rs1591386	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs17131473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17131476	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17131485	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs17131488	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs1889598	0.87[ASN][1000 genomes]
rs1932050	0.87[ASN][1000 genomes]
rs2068652	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2152121	0.87[ASN][1000 genomes]
rs2152122	0.87[ASN][1000 genomes]
rs2152126	0.93[CHB][hapmap]
rs2782768	0.87[ASN][1000 genomes]
rs2782769	0.86[ASN][1000 genomes]
rs2782770	0.87[ASN][1000 genomes]
rs2782786	0.93[CHB][hapmap]
rs2782787	0.93[CHB][hapmap]
rs2782788	0.93[CHB][hapmap]
rs2820513	0.93[CHB][hapmap]
rs2820540	0.81[ASN][1000 genomes]
rs2820541	0.87[ASN][1000 genomes]
rs2820542	0.87[ASN][1000 genomes]
rs34087524	0.96[ASN][1000 genomes]
rs34745168	0.96[ASN][1000 genomes]
rs35615554	0.96[ASN][1000 genomes]
rs36021131	0.90[ASN][1000 genomes]
rs55884889	0.91[ASN][1000 genomes]
rs6661453	0.88[ASN][1000 genomes]
rs6684573	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs74086786	0.99[ASN][1000 genomes]
rs74086973	0.93[ASN][1000 genomes]
rs74086974	0.89[ASN][1000 genomes]
rs74086976	0.89[ASN][1000 genomes]
rs74086980	0.89[ASN][1000 genomes]
rs74086985	0.86[ASN][1000 genomes]
rs74086993	0.86[ASN][1000 genomes]
rs915220	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2763076	chr1:71302563-71314457	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv516651	chr1:71305078-71306749	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71304800-71305800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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