Variant report

Variant	rs12050169
Chromosome Location	chr14:37564696-37564697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37560763..37563483-chr14:37564350..37566033,2	MCF-7	breast:
2	chr14:37563198..37565090-chr14:38061386..38063484,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129514	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1012199	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10129152	0.83[ASN][1000 genomes]
rs10132328	0.97[ASN][1000 genomes]
rs10133673	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10136238	0.88[ASN][1000 genomes]
rs10141752	0.88[ASN][1000 genomes]
rs10142021	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10151092	0.83[ASN][1000 genomes]
rs10220281	0.95[ASN][1000 genomes]
rs10220604	0.89[ASN][1000 genomes]
rs10459480	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10483485	0.88[ASN][1000 genomes]
rs12050463	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12889634	0.97[ASN][1000 genomes]
rs17106189	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106209	0.88[ASN][1000 genomes]
rs17106216	0.88[ASN][1000 genomes]
rs17106275	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106290	0.97[ASN][1000 genomes]
rs17106291	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106333	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17106393	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17106396	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17106404	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17106433	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17841015	0.88[ASN][1000 genomes]
rs17841017	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1884220	0.97[ASN][1000 genomes]
rs1884221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884775	0.88[ASN][1000 genomes]
rs1884777	0.97[ASN][1000 genomes]
rs1950374	0.83[ASN][1000 genomes]
rs1950375	0.83[ASN][1000 genomes]
rs1950376	0.97[ASN][1000 genomes]
rs1950814	0.88[ASN][1000 genomes]
rs1955760	0.97[ASN][1000 genomes]
rs1955761	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1955762	0.84[ASN][1000 genomes]
rs1955763	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1956423	0.88[ASN][1000 genomes]
rs1956424	0.88[ASN][1000 genomes]
rs1971451	0.83[ASN][1000 genomes]
rs1998121	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2057171	0.97[ASN][1000 genomes]
rs2078246	0.83[ASN][1000 genomes]
rs2415379	0.91[ASN][1000 genomes]
rs2415380	0.91[ASN][1000 genomes]
rs2415388	0.83[ASN][1000 genomes]
rs28517624	0.88[ASN][1000 genomes]
rs28593311	0.83[ASN][1000 genomes]
rs4356385	0.93[ASN][1000 genomes]
rs61293305	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6571789	0.81[ASN][1000 genomes]
rs7140991	0.95[ASN][1000 genomes]
rs7151524	0.82[ASN][1000 genomes]
rs7160129	0.83[ASN][1000 genomes]
rs74045463	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74045478	0.97[ASN][1000 genomes]
rs8008478	0.97[ASN][1000 genomes]
rs8014186	1.00[ASN][1000 genomes]
rs8019489	0.91[ASN][1000 genomes]
rs8020153	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37561400-37568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37562800-37564800	Enhancers	K562	blood

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