Variant report
| Variant | rs1205089 |
|---|---|
| Chromosome Location | chr14:72281051-72281052 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1205088 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1205090 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1205091 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1205092 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1205093 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1205094 | 0.83[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1205095 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1205096 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1205097 | 0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1205098 | 0.97[EUR][1000 genomes] |
| rs1205101 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1205102 | 0.98[EUR][1000 genomes] |
| rs1205103 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1205105 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1205106 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2429571 | 0.83[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2490342 | 0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56384578 | 0.93[ASN][1000 genomes] |
| rs61322114 | 0.93[ASN][1000 genomes] |
| rs8017068 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3398985 | chr14:71927884-72404676 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv530794 | chr14:72113818-73034008 | Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1047559 | chr14:72151736-72282151 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1342 | chr14:72260578-72305563 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:72280000-72283800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
