Variant report

Variant	rs12051673
Chromosome Location	chr17:16500136-16500137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16471456..16473780-chr17:16498395..16500640,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141040	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1005369	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1005370	0.96[ASN][1000 genomes]
rs12103873	0.81[ASN][1000 genomes]
rs16959857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16959869	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16959870	0.96[ASN][1000 genomes]
rs28431824	0.94[ASN][1000 genomes]
rs28458310	0.94[ASN][1000 genomes]
rs28458353	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28525658	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28526077	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28612609	0.84[ASN][1000 genomes]
rs28626982	0.94[ASN][1000 genomes]
rs28636605	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28674185	0.94[ASN][1000 genomes]
rs28751872	0.94[ASN][1000 genomes]
rs28754336	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28792801	0.96[ASN][1000 genomes]
rs28826699	0.96[ASN][1000 genomes]
rs28865976	0.96[ASN][1000 genomes]
rs28875211	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3813762	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4352086	0.94[ASN][1000 genomes]
rs4791672	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4791673	0.96[ASN][1000 genomes]
rs4791676	0.94[ASN][1000 genomes]
rs4791678	0.94[ASN][1000 genomes]
rs4792757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4792760	0.93[ASN][1000 genomes]
rs4792761	0.94[ASN][1000 genomes]
rs4792762	0.94[ASN][1000 genomes]
rs5000166	0.94[ASN][1000 genomes]
rs55920274	0.93[ASN][1000 genomes]
rs56303920	0.94[ASN][1000 genomes]
rs57305125	0.81[ASN][1000 genomes]
rs57448521	0.93[ASN][1000 genomes]
rs57694811	0.81[ASN][1000 genomes]
rs58164310	0.94[ASN][1000 genomes]
rs59486407	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59594997	0.94[ASN][1000 genomes]
rs59826203	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62072781	0.96[ASN][1000 genomes]
rs62072790	0.83[ASN][1000 genomes]
rs62072792	0.96[ASN][1000 genomes]
rs62072845	0.91[ASN][1000 genomes]
rs62073660	0.96[ASN][1000 genomes]
rs6502514	0.96[ASN][1000 genomes]
rs7208075	0.94[ASN][1000 genomes]
rs7213274	0.94[ASN][1000 genomes]
rs7217544	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7217717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7218241	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7219632	0.96[ASN][1000 genomes]
rs7221518	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7222875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7225641	0.94[ASN][1000 genomes]
rs7226328	1.00[CHB][hapmap]
rs72637355	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72637356	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637357	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637358	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637359	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72637360	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72637361	0.83[ASN][1000 genomes]
rs72637362	0.84[ASN][1000 genomes]
rs8065558	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8068349	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8069286	0.82[ASN][1000 genomes]
rs8074285	0.96[ASN][1000 genomes]
rs8074464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8074487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8075374	0.80[CEU][hapmap];0.95[JPT][hapmap]
rs8075988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8076849	0.94[ASN][1000 genomes]
rs8082225	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8082323	0.81[ASN][1000 genomes]
rs8082462	0.81[ASN][1000 genomes]
rs8082650	0.94[ASN][1000 genomes]
rs9889227	0.96[ASN][1000 genomes]
rs9890123	0.96[ASN][1000 genomes]
rs9890698	0.96[ASN][1000 genomes]
rs9891138	0.96[ASN][1000 genomes]
rs9892170	0.80[ASN][1000 genomes]
rs9894637	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9898888	0.84[ASN][1000 genomes]
rs9899785	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9899919	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9901145	0.83[ASN][1000 genomes]
rs9904901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9905710	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9906261	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9906728	0.96[ASN][1000 genomes]
rs9907785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9908015	0.94[ASN][1000 genomes]
rs9908390	0.94[ASN][1000 genomes]
rs9909044	0.96[ASN][1000 genomes]
rs9909955	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9910087	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9910842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9911162	0.94[ASN][1000 genomes]
rs9911524	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9911608	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9911677	1.00[CHB][hapmap]
rs9911820	0.94[ASN][1000 genomes]
rs9911851	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9915121	0.81[ASN][1000 genomes]
rs9916069	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9916258	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9916819	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16498800-16502400	Weak transcription	Fetal Intestine Small	intestine

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