Variant report

Variant	rs12057528
Chromosome Location	chr1:211613209-211613210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12067738	1.00[AMR][1000 genomes]
rs12073144	1.00[AMR][1000 genomes]
rs12079263	1.00[AMR][1000 genomes]
rs12080424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089830	1.00[AMR][1000 genomes]
rs12724746	1.00[AMR][1000 genomes]
rs60789444	1.00[AMR][1000 genomes]
rs6661875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73071099	1.00[AMR][1000 genomes]
rs73072803	1.00[AMR][1000 genomes]
rs73072808	1.00[AMR][1000 genomes]
rs73072811	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1824154	chr1:211565640-211614280	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv945612	chr1:211593276-211615726	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211604800-211614800	Weak transcription	Gastric	stomach
2	chr1:211612200-211617400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:211613000-211613600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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