Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221448590..221451526-chr7:74072557..74074916,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11118661	1.00[EUR][1000 genomes]
rs11118693	1.00[EUR][1000 genomes]
rs11118695	1.00[EUR][1000 genomes]
rs11118697	1.00[EUR][1000 genomes]
rs11804822	1.00[EUR][1000 genomes]
rs11811531	1.00[EUR][1000 genomes]
rs12058952	1.00[EUR][1000 genomes]
rs12070831	1.00[EUR][1000 genomes]
rs12073583	1.00[EUR][1000 genomes]
rs12077976	1.00[EUR][1000 genomes]
rs12085527	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086603	1.00[EUR][1000 genomes]
rs12086869	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087664	1.00[EUR][1000 genomes]
rs60865356	1.00[EUR][1000 genomes]
rs6663534	1.00[EUR][1000 genomes]
rs6667275	1.00[EUR][1000 genomes]
rs73094956	1.00[EUR][1000 genomes]
rs73101522	1.00[EUR][1000 genomes]
rs74144384	1.00[EUR][1000 genomes]
rs74144425	1.00[EUR][1000 genomes]
rs7522887	1.00[EUR][1000 genomes]
rs7536615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221442400-221450400	Weak transcription	HSMM	muscle
2	chr1:221442600-221452200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:221448400-221450200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:221448400-221450400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:221449200-221450000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:221449200-221450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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