Variant report

Variant	rs12058457
Chromosome Location	chr1:71239057-71239058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10889894	1.00[AMR][1000 genomes]
rs11209674	1.00[AMR][1000 genomes]
rs11209676	1.00[AMR][1000 genomes]
rs11209695	1.00[EUR][1000 genomes]
rs11799545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11809656	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12061298	1.00[AMR][1000 genomes]
rs12063164	1.00[AMR][1000 genomes]
rs12067572	1.00[AMR][1000 genomes]
rs12067990	1.00[AMR][1000 genomes]
rs12073070	1.00[EUR][1000 genomes]
rs12073536	1.00[AMR][1000 genomes]
rs2068651	1.00[AMR][1000 genomes]
rs6699994	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7551712	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3452322	chr1:71237020-71240689	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3452319	chr1:71237194-71240416	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3452323	chr1:71237208-71240443	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3452321	chr1:71237251-71240423	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv17158	chr1:71237358-71240311	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3452324	chr1:71237364-71240328	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71238800-71243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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