Variant report

Variant	rs12058733
Chromosome Location	chr1:104833423-104833424
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4451557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4463678	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4607887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72681557	0.81[EUR][1000 genomes]
rs7521048	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7538302	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs949926	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs981031	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872072	chr1:104470622-105076810	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2762170	chr1:104817700-105411596	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:104833000-104833800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr1:104833000-104834000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:104833000-104834000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:104833000-104834000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr1:104833200-104833800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:104833400-104834000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:104833400-104834000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:104833400-104834200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:104833400-104834200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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