Variant report
| Variant | rs12058845 |
|---|---|
| Chromosome Location | chr1:195717930-195717931 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:195710497..195713809-chr1:195716668..195718919,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10921920 | 1.00[AMR][1000 genomes] |
| rs12057377 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12065480 | 1.00[AMR][1000 genomes] |
| rs12065832 | 1.00[AMR][1000 genomes] |
| rs12070909 | 1.00[AMR][1000 genomes] |
| rs12071542 | 1.00[AMR][1000 genomes] |
| rs12074439 | 1.00[AMR][1000 genomes] |
| rs12077673 | 1.00[AMR][1000 genomes] |
| rs12090999 | 1.00[AMR][1000 genomes] |
| rs12097767 | 1.00[AMR][1000 genomes] |
| rs28473187 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872894 | chr1:195053221-195745968 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009307 | chr1:195368381-195726703 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv872932 | chr1:195447286-195736070 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv872937 | chr1:195493538-195849028 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1007203 | chr1:195672857-195902360 | Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:195715000-195718400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
