Variant report

Variant	rs12059208
Chromosome Location	chr1:71169806-71169807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11806945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12057342	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12080162	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12097022	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17131424	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2152123	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2782771	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2782772	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links