The 2.0 version of rSNPBase

Variant report

Variant rs12059670
Chromosome Location chr1:85798318-85798319
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85790600-85800000 Enhancers HUVEC blood vessel
2 chr1:85792200-85806000 Weak transcription Fetal Kidney kidney
3 chr1:85793200-85798600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr1:85795200-85798600 Weak transcription Fetal Intestine Large intestine
5 chr1:85795600-85798400 Enhancers Primary B cells from peripheral blood blood
6 chr1:85796200-85799800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr1:85796600-85798400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:85796600-85798600 Enhancers HSMMtube muscle
9 chr1:85796600-85799600 Enhancers Osteobl bone
10 chr1:85796600-85801800 Weak transcription Gastric stomach
11 chr1:85796600-85804000 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr1:85796600-85809400 Weak transcription Stomach Mucosa stomach
13 chr1:85796800-85798400 Enhancers Hela-S3 cervix
14 chr1:85796800-85798600 Weak transcription Ovary ovary
15 chr1:85796800-85798600 Enhancers NHDF-Ad bronchial
16 chr1:85796800-85799600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:85796800-85804200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr1:85796800-85805400 Weak transcription Aorta Aorta
19 chr1:85796800-85805400 Weak transcription HepG2 liver
20 chr1:85796800-85806400 Weak transcription Small Intestine intestine
21 chr1:85796800-85809600 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:85797000-85798400 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:85797000-85800600 Weak transcription HMEC breast
24 chr1:85797000-85805000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:85797400-85798800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
26 chr1:85797400-85799000 Enhancers Fetal Muscle Trunk muscle
27 chr1:85797400-85800200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:85797600-85798400 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:85797600-85798800 Enhancers Skeletal Muscle Female skeletal muscle
30 chr1:85797600-85799200 Genic enhancers HSMM muscle
31 chr1:85797600-85800400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:85797600-85803600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:85797800-85798400 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr1:85797800-85798400 Enhancers Right Ventricle heart
35 chr1:85797800-85798600 Enhancers Pancreas Pancrea
36 chr1:85797800-85798800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:85797800-85799200 Strong transcription Fetal Intestine Small intestine
38 chr1:85798000-85798400 Genic enhancers Fetal Muscle Leg muscle
39 chr1:85798000-85798800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
40 chr1:85798000-85798800 Enhancers Skeletal Muscle Male skeletal muscle
41 chr1:85798000-85799000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
42 chr1:85798000-85799200 Genic enhancers Muscle Satellite Cultured Cells --
43 chr1:85798200-85798400 Enhancers H1 Cell Line embryonic stem cell
44 chr1:85798200-85798400 Enhancers Psoas Muscle Psoas
45 chr1:85798200-85798600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
46 chr1:85798200-85798600 ZNF genes & repeats Spleen Spleen
47 chr1:85798200-85798800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:85798200-85798800 ZNF genes & repeats Lung lung
49 chr1:85798200-85799000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr1:85798200-85799000 ZNF genes & repeats Fetal Stomach stomach

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Last update: Aug 31, 2015