Variant report

Variant	rs12061570
Chromosome Location	chr1:215532841-215532842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215531102..215532894-chr1:215533168..215535488,2	MCF-7	breast:
2	chr1:215530323..215533254-chr1:215538502..215541402,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10465665	1.00[EUR][1000 genomes]
rs10864176	1.00[EUR][1000 genomes]
rs11120520	1.00[EUR][1000 genomes]
rs11120521	1.00[EUR][1000 genomes]
rs11120523	1.00[EUR][1000 genomes]
rs11120553	1.00[EUR][1000 genomes]
rs11120555	1.00[EUR][1000 genomes]
rs11120556	1.00[EUR][1000 genomes]
rs11120567	0.83[AMR][1000 genomes]
rs11120568	0.83[AMR][1000 genomes]
rs11120570	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120571	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120572	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12074526	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076291	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12077050	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077731	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077775	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078628	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079873	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080017	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093762	0.83[AMR][1000 genomes]
rs12094048	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095159	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs13374480	1.00[EUR][1000 genomes]
rs13374655	1.00[EUR][1000 genomes]
rs1416650	1.00[EUR][1000 genomes]
rs1556904	1.00[EUR][1000 genomes]
rs17024391	1.00[EUR][1000 genomes]
rs17024751	1.00[EUR][1000 genomes]
rs17024855	1.00[EUR][1000 genomes]
rs1911547	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4082520	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4082521	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4265403	1.00[EUR][1000 genomes]
rs4593794	1.00[EUR][1000 genomes]
rs4633260	1.00[EUR][1000 genomes]
rs5019190	1.00[EUR][1000 genomes]
rs56799360	1.00[EUR][1000 genomes]
rs57501351	1.00[EUR][1000 genomes]
rs59473177	1.00[EUR][1000 genomes]
rs60597792	1.00[EUR][1000 genomes]
rs61070702	1.00[EUR][1000 genomes]
rs61272547	1.00[EUR][1000 genomes]
rs6678266	1.00[EUR][1000 genomes]
rs6690170	1.00[EUR][1000 genomes]
rs6695816	1.00[EUR][1000 genomes]
rs73091976	1.00[EUR][1000 genomes]
rs73091981	1.00[EUR][1000 genomes]
rs73091996	1.00[EUR][1000 genomes]
rs7516768	1.00[EUR][1000 genomes]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215530600-215534200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:215532400-215533000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links