Variant report

Variant	rs12061587
Chromosome Location	chr1:215219541-215219542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1015244	1.00[CHB][hapmap]
rs10429947	0.84[EUR][1000 genomes]
rs10779638	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11120469	0.91[AFR][1000 genomes]
rs11120472	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11120474	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12062465	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12066174	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12069528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069674	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12069967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12078139	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12082755	0.91[AFR][1000 genomes]
rs12084973	0.82[AFR][1000 genomes]
rs12088528	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12089490	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12090549	0.87[YRI][hapmap]
rs12092077	0.91[AFR][1000 genomes]
rs12096956	0.87[YRI][hapmap]
rs12097853	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12121815	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12239750	0.84[ASN][1000 genomes]
rs1339409	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1538546	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1947364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2363553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2802656	1.00[JPT][hapmap]
rs4420064	0.85[ASN][1000 genomes]
rs4433363	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4573492	1.00[CHB][hapmap]
rs4589083	0.95[ASN][1000 genomes]
rs55651080	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55662674	1.00[AMR][1000 genomes]
rs55922125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56001365	1.00[AMR][1000 genomes]
rs56036238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56053976	0.84[ASN][1000 genomes]
rs56257399	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56274886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56373924	0.84[ASN][1000 genomes]
rs59581685	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60526056	1.00[AMR][1000 genomes]
rs61818261	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61818265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818267	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61818294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61818295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818296	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818298	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818301	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818303	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818304	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818305	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818307	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818308	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818309	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818310	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818311	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818319	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818321	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818323	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818324	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818325	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818326	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818327	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818329	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818331	0.84[ASN][1000 genomes]
rs61819975	1.00[AMR][1000 genomes]
rs61819978	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61819980	0.94[ASN][1000 genomes]
rs61819981	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61819982	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820009	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820011	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820013	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820014	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820015	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6665177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7530450	1.00[CHB][hapmap]
rs7535436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7551562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215216200-215222000	Weak transcription	Osteobl	bone
2	chr1:215218600-215220000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:215219000-215220200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215219000-215220600	Enhancers	NHDF-Ad	bronchial
5	chr1:215219200-215221200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:215219400-215220200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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