Variant report

Variant	rs12062098
Chromosome Location	chr1:215337931-215337932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10127521	0.90[ASN][1000 genomes]
rs10746455	0.86[ASN][1000 genomes]
rs10779642	0.91[ASN][1000 genomes]
rs10779643	0.91[ASN][1000 genomes]
rs10779648	0.80[ASN][1000 genomes]
rs10779649	0.92[ASN][1000 genomes]
rs10779650	0.92[ASN][1000 genomes]
rs10779651	0.92[ASN][1000 genomes]
rs10779652	0.95[ASN][1000 genomes]
rs10864157	0.91[ASN][1000 genomes]
rs11120495	0.88[ASN][1000 genomes]
rs11120497	0.84[ASN][1000 genomes]
rs11120500	0.90[ASN][1000 genomes]
rs11120516	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1112101	0.88[ASN][1000 genomes]
rs12120091	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12135076	0.92[ASN][1000 genomes]
rs12138497	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12141874	0.93[ASN][1000 genomes]
rs12410041	0.90[ASN][1000 genomes]
rs12411068	0.88[ASN][1000 genomes]
rs12567520	0.92[ASN][1000 genomes]
rs1361340	0.93[ASN][1000 genomes]
rs1416647	0.88[ASN][1000 genomes]
rs1578137	0.88[ASN][1000 genomes]
rs2363556	0.92[ASN][1000 genomes]
rs2363557	0.91[ASN][1000 genomes]
rs2363566	0.93[ASN][1000 genomes]
rs2363567	0.93[ASN][1000 genomes]
rs2885813	0.91[ASN][1000 genomes]
rs3931584	0.80[ASN][1000 genomes]
rs3931585	0.91[ASN][1000 genomes]
rs4269745	0.90[ASN][1000 genomes]
rs4300189	0.90[ASN][1000 genomes]
rs4303048	0.91[ASN][1000 genomes]
rs4548407	0.87[ASN][1000 genomes]
rs4607848	0.90[ASN][1000 genomes]
rs4655277	0.92[ASN][1000 genomes]
rs4655278	0.93[ASN][1000 genomes]
rs4655393	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4655394	0.93[ASN][1000 genomes]
rs4655395	0.93[ASN][1000 genomes]
rs61818320	0.90[ASN][1000 genomes]
rs61818328	0.91[ASN][1000 genomes]
rs6657313	0.93[ASN][1000 genomes]
rs6662353	0.90[ASN][1000 genomes]
rs6672978	0.80[ASN][1000 genomes]
rs6673739	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6675926	0.91[ASN][1000 genomes]
rs6678758	0.91[ASN][1000 genomes]
rs6684084	0.92[ASN][1000 genomes]
rs6695343	0.96[ASN][1000 genomes]
rs6695967	0.91[ASN][1000 genomes]
rs6696333	0.90[ASN][1000 genomes]
rs72735359	0.91[ASN][1000 genomes]
rs7540029	0.87[ASN][1000 genomes]
rs7547572	0.93[ASN][1000 genomes]
rs9793382	0.90[ASN][1000 genomes]
rs9793690	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215334400-215338000	Weak transcription	NHDF-Ad	bronchial
2	chr1:215334400-215339400	Weak transcription	Osteobl	bone
3	chr1:215334400-215340000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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