Variant report

Variant	rs12062740
Chromosome Location	chr1:215533213-215533214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215530323..215533254-chr1:215538502..215541402,2	K562	blood:
2	chr1:215531102..215532894-chr1:215533168..215535488,2	MCF-7	breast:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10127809	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10494998	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10494999	0.93[ASN][1000 genomes]
rs11120554	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11120588	0.81[ASN][1000 genomes]
rs11120591	0.81[ASN][1000 genomes]
rs12064396	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12066481	1.00[ASN][1000 genomes]
rs12070874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080428	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12084684	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12089271	0.81[ASN][1000 genomes]
rs12093830	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376355	1.00[ASN][1000 genomes]
rs1395722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1557172	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs17024732	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17024744	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17024755	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17024758	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1876407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876408	1.00[ASN][1000 genomes]
rs2885989	0.92[ASN][1000 genomes]
rs35134381	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3845523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607849	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56802573	1.00[ASN][1000 genomes]
rs56956076	0.81[ASN][1000 genomes]
rs56988669	0.85[ASN][1000 genomes]
rs57110734	0.92[ASN][1000 genomes]
rs57309511	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57379455	0.92[ASN][1000 genomes]
rs57628126	0.81[ASN][1000 genomes]
rs57758604	0.81[ASN][1000 genomes]
rs57792259	0.85[ASN][1000 genomes]
rs58163611	0.92[ASN][1000 genomes]
rs58330534	0.81[ASN][1000 genomes]
rs58342290	1.00[ASN][1000 genomes]
rs58425452	0.81[ASN][1000 genomes]
rs58542168	0.81[ASN][1000 genomes]
rs58557470	0.81[ASN][1000 genomes]
rs58594611	0.81[ASN][1000 genomes]
rs58597977	0.81[ASN][1000 genomes]
rs58629829	0.81[ASN][1000 genomes]
rs58649725	0.81[ASN][1000 genomes]
rs58836680	0.81[ASN][1000 genomes]
rs58919310	0.81[ASN][1000 genomes]
rs59040705	0.81[ASN][1000 genomes]
rs59233975	0.81[ASN][1000 genomes]
rs59628625	0.92[ASN][1000 genomes]
rs60026262	0.92[ASN][1000 genomes]
rs60365921	0.81[ASN][1000 genomes]
rs60404320	0.88[ASN][1000 genomes]
rs60620576	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61057668	1.00[ASN][1000 genomes]
rs61059263	1.00[ASN][1000 genomes]
rs61167296	1.00[ASN][1000 genomes]
rs61343540	0.85[ASN][1000 genomes]
rs61362928	0.93[ASN][1000 genomes]
rs61368758	0.81[ASN][1000 genomes]
rs61400453	1.00[ASN][1000 genomes]
rs61600848	0.92[ASN][1000 genomes]
rs61618553	0.92[ASN][1000 genomes]
rs61633090	0.81[ASN][1000 genomes]
rs61685588	0.81[ASN][1000 genomes]
rs6674016	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6678049	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6679048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686570	1.00[ASN][1000 genomes]
rs6689680	0.86[JPT][hapmap]
rs73081443	0.81[ASN][1000 genomes]
rs73081447	0.81[ASN][1000 genomes]
rs73081459	0.81[ASN][1000 genomes]
rs73081470	0.81[ASN][1000 genomes]
rs73081479	0.81[ASN][1000 genomes]
rs73081487	0.81[ASN][1000 genomes]
rs73081497	0.81[ASN][1000 genomes]
rs73083410	0.81[ASN][1000 genomes]
rs73083415	0.81[ASN][1000 genomes]
rs73083420	0.81[ASN][1000 genomes]
rs73083421	0.81[ASN][1000 genomes]
rs73083429	0.81[ASN][1000 genomes]
rs73083436	0.81[ASN][1000 genomes]
rs73083437	0.81[ASN][1000 genomes]
rs73083461	0.81[ASN][1000 genomes]
rs73083470	0.81[ASN][1000 genomes]
rs73090166	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73090172	1.00[ASN][1000 genomes]
rs73090177	1.00[ASN][1000 genomes]
rs73090179	1.00[ASN][1000 genomes]
rs73091959	1.00[ASN][1000 genomes]
rs73091984	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73091986	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73091998	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73094106	0.92[ASN][1000 genomes]
rs73094120	0.81[ASN][1000 genomes]
rs73100105	0.81[ASN][1000 genomes]
rs73100108	0.81[ASN][1000 genomes]
rs73100110	0.81[ASN][1000 genomes]
rs73100116	0.81[ASN][1000 genomes]
rs73100129	0.81[ASN][1000 genomes]
rs73100141	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215530600-215534200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:215533000-215534000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:215533200-215533800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:215533200-215534400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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