Variant report

Variant	rs12063243
Chromosome Location	chr1:220739097-220739098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220738520..220740404-chr1:220751038..220753296,2	MCF-7	breast:

rs_ID	r²[population]
rs10047144	0.83[YRI][hapmap]
rs10047220	0.83[YRI][hapmap]
rs11118587	0.94[YRI][hapmap]
rs12057177	1.00[AFR][1000 genomes]
rs12059796	0.89[YRI][hapmap]
rs12060484	0.94[YRI][hapmap]
rs12061430	0.97[AFR][1000 genomes]
rs12063445	0.94[YRI][hapmap]
rs12068169	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12072544	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12074437	0.85[YRI][hapmap]
rs12085964	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17007883	0.93[YRI][hapmap]
rs17008083	0.94[YRI][hapmap]
rs57976923	0.95[AFR][1000 genomes]
rs6699763	0.88[AFR][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
2	chr1:220724600-220741600	Weak transcription	Aorta	Aorta
3	chr1:220728000-220745200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:220730400-220747400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:220735400-220739800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:220737400-220739600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:220737800-220739200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:220737800-220739800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:220737800-220746400	Weak transcription	Fetal Brain Female	brain
10	chr1:220738400-220739600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr1:220738600-220739200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:220738600-220739200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:220738600-220739200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:220738600-220739200	Enhancers	Adipose Nuclei	Adipose
15	chr1:220738600-220739400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:220738600-220739400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:220738600-220740000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:220738800-220739200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr1:220738800-220739200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:220738800-220739200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:220738800-220739200	Enhancers	Fetal Heart	heart
22	chr1:220738800-220739200	Enhancers	Left Ventricle	heart
23	chr1:220738800-220739400	Enhancers	Psoas Muscle	Psoas
24	chr1:220738800-220739400	Enhancers	Right Atrium	heart
25	chr1:220738800-220739600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr1:220738800-220743000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr1:220739000-220739200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr1:220739000-220739200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:220739000-220739200	Enhancers	Brain Germinal Matrix	brain
30	chr1:220739000-220739600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:220739000-220740400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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