Variant report

Variant	rs12065415
Chromosome Location	chr1:85262354-85262355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11161453	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12057661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12062402	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12062585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4617419	1.00[JPT][hapmap]
rs55967683	0.86[EUR][1000 genomes]
rs57327395	0.86[EUR][1000 genomes]
rs72716976	0.86[EUR][1000 genomes]
rs72716980	0.86[EUR][1000 genomes]
rs72716989	0.86[EUR][1000 genomes]
rs72716991	0.81[EUR][1000 genomes]
rs74096144	0.87[AFR][1000 genomes]
rs9324137	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324139	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9724727	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9726164	0.86[EUR][1000 genomes]
rs9728120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9729198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9729375	0.87[AFR][1000 genomes]
rs9729380	0.87[AFR][1000 genomes]
rs9729820	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85251800-85263400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:85261400-85262400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:85261600-85262800	Weak transcription	Fetal Heart	heart
5	chr1:85261600-85263000	Weak transcription	Esophagus	oesophagus
6	chr1:85261600-85263000	Weak transcription	Left Ventricle	heart
7	chr1:85261600-85263400	Active TSS	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links