Variant report

Variant	rs12065966
Chromosome Location	chr1:172885617-172885618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11799419	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808521	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060919	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063352	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063378	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070646	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077150	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845072	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845082	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845125	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1811833	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394470	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803577	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865614	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56385939	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440247	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57583107	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58489932	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60905087	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983514	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172882200-172885800	Weak transcription	Aorta	Aorta
2	chr1:172882800-172889400	Enhancers	HUVEC	blood vessel
3	chr1:172883000-172889600	Enhancers	NHLF	lung
4	chr1:172883400-172888200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:172883400-172888400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:172883400-172889200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:172883400-172889400	Enhancers	NHDF-Ad	bronchial
8	chr1:172883600-172886600	Enhancers	A549	lung
9	chr1:172883600-172886800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:172883600-172887000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:172883600-172888200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:172883600-172888200	Enhancers	Osteobl	bone
13	chr1:172883600-172889400	Enhancers	HMEC	breast
14	chr1:172883600-172890400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:172883800-172886400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:172883800-172890600	Enhancers	HSMMtube	muscle
17	chr1:172884000-172889600	Enhancers	HSMM	muscle
18	chr1:172884200-172887000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:172884400-172887000	Enhancers	NHEK	skin
20	chr1:172884400-172888400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:172884600-172886400	Weak transcription	Hela-S3	cervix
22	chr1:172884800-172887000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:172885000-172886600	Weak transcription	Colon Smooth Muscle	Colon
24	chr1:172885200-172889800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:172885400-172886600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr1:172885400-172888200	Enhancers	NH-A	brain
27	chr1:172885600-172887200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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