Variant report

Variant	rs12066143
Chromosome Location	chr1:172814855-172814856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172809608..172812514-chr1:172814768..172817076,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10218696	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912482	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12075908	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2422256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34884278	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4553232	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4916196	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6662018	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6695422	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7517810	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs7519046	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172813000-172819200	Weak transcription	HUVEC	blood vessel
2	chr1:172813600-172815000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:172813600-172815200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:172813600-172815400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:172813600-172815400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:172813600-172815600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:172813600-172815800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:172813800-172815400	Enhancers	Primary T cells from cord blood	blood
9	chr1:172813800-172815400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:172813800-172815400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:172813800-172815400	Enhancers	Dnd41	blood
12	chr1:172813800-172815600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:172813800-172815800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:172814200-172815000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:172814200-172815000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:172814200-172815200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr1:172814200-172815600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:172814200-172815600	Enhancers	Fetal Thymus	thymus
19	chr1:172814400-172815000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:172814400-172815000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:172814400-172815000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:172814400-172815000	Enhancers	HMEC	breast
23	chr1:172814400-172815000	Enhancers	HSMMtube	muscle
24	chr1:172814400-172815000	Enhancers	Osteobl	bone
25	chr1:172814600-172815400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr1:172814800-172819800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:172814800-172820000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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