Variant report

Variant	rs12067572
Chromosome Location	chr1:71305698-71305699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10889894	1.00[AMR][1000 genomes]
rs11209674	1.00[AMR][1000 genomes]
rs11209676	1.00[AMR][1000 genomes]
rs11799545	1.00[AMR][1000 genomes]
rs11809656	1.00[AMR][1000 genomes]
rs12058457	1.00[AMR][1000 genomes]
rs12058470	1.00[AMR][1000 genomes]
rs12061298	1.00[AMR][1000 genomes]
rs12063164	1.00[AMR][1000 genomes]
rs12067724	0.84[YRI][hapmap]
rs12067990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073536	1.00[AMR][1000 genomes]
rs17131475	1.00[EUR][1000 genomes]
rs2068651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6699994	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2763076	chr1:71302563-71314457	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv516651	chr1:71305078-71306749	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71304800-71305800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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