Variant report

Variant	rs12068939
Chromosome Location	chr1:225041498-225041499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224701147..224702046-chr1:225040391..225041645,4	K562	blood:
2	chr1:225040139..225042532-chr1:225052061..225054913,2	K562	blood:
3	chr1:225041281..225043818-chr1:225048183..225050379,2	K562	blood:

Variant related genes	Relation type
ENSG00000143786	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10399821	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10399941	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10495231	0.81[ASN][1000 genomes]
rs10799282	0.96[ASN][1000 genomes]
rs10799283	0.96[ASN][1000 genomes]
rs10915712	1.00[JPT][hapmap]
rs10915713	1.00[JPT][hapmap]
rs10915733	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10915743	0.96[ASN][1000 genomes]
rs10915744	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10915745	0.96[ASN][1000 genomes]
rs10915747	0.89[ASN][1000 genomes]
rs10915748	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915749	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915750	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915751	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915757	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915758	0.89[ASN][1000 genomes]
rs10915761	0.81[ASN][1000 genomes]
rs10915762	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10915763	0.81[ASN][1000 genomes]
rs11487461	0.96[ASN][1000 genomes]
rs12060676	0.96[ASN][1000 genomes]
rs12061172	0.81[ASN][1000 genomes]
rs12061874	0.82[ASN][1000 genomes]
rs12068731	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12069537	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12071453	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12072713	0.89[ASN][1000 genomes]
rs12073050	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12074130	0.89[ASN][1000 genomes]
rs12077191	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12082397	0.89[ASN][1000 genomes]
rs12086122	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12086373	0.89[ASN][1000 genomes]
rs12088836	0.81[ASN][1000 genomes]
rs12090519	0.96[ASN][1000 genomes]
rs12093086	0.89[ASN][1000 genomes]
rs12093545	0.89[ASN][1000 genomes]
rs12095812	0.89[ASN][1000 genomes]
rs12095841	0.96[ASN][1000 genomes]
rs12097532	0.96[ASN][1000 genomes]
rs12097577	0.96[ASN][1000 genomes]
rs1482278	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16858094	0.96[ASN][1000 genomes]
rs16858965	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2244108	0.96[ASN][1000 genomes]
rs2244109	0.96[ASN][1000 genomes]
rs2244198	0.96[ASN][1000 genomes]
rs2254430	0.96[ASN][1000 genomes]
rs2406099	0.96[ASN][1000 genomes]
rs2449279	0.81[ASN][1000 genomes]
rs2449305	0.81[ASN][1000 genomes]
rs2449306	0.81[ASN][1000 genomes]
rs2456344	0.81[ASN][1000 genomes]
rs2456350	0.81[ASN][1000 genomes]
rs2456354	0.81[ASN][1000 genomes]
rs2501103	0.81[ASN][1000 genomes]
rs2662910	0.96[ASN][1000 genomes]
rs2662911	0.96[ASN][1000 genomes]
rs2662913	0.96[ASN][1000 genomes]
rs2802546	0.96[ASN][1000 genomes]
rs2802547	0.83[ASN][1000 genomes]
rs2802567	0.96[ASN][1000 genomes]
rs2802736	0.96[ASN][1000 genomes]
rs28510743	0.96[ASN][1000 genomes]
rs28673436	0.96[ASN][1000 genomes]
rs4256778	0.96[ASN][1000 genomes]
rs55708629	0.81[ASN][1000 genomes]
rs56302122	0.81[ASN][1000 genomes]
rs59318794	0.96[ASN][1000 genomes]
rs60619295	0.96[ASN][1000 genomes]
rs6662177	0.81[ASN][1000 genomes]
rs6680233	0.81[ASN][1000 genomes]
rs6689287	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6694400	0.96[ASN][1000 genomes]
rs6700281	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs74146611	0.81[ASN][1000 genomes]
rs74149417	0.96[ASN][1000 genomes]
rs74149420	0.96[ASN][1000 genomes]
rs74149426	0.89[ASN][1000 genomes]
rs74149428	0.89[ASN][1000 genomes]
rs74149429	0.85[ASN][1000 genomes]
rs74149436	0.81[ASN][1000 genomes]
rs7527885	0.82[CHB][hapmap];0.89[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225039000-225042000	Enhancers	Dnd41	blood
2	chr1:225040800-225043800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:225041200-225043600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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