Variant report

Variant	rs12069537
Chromosome Location	chr1:225039295-225039296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:224888278..224889586-chr1:225038704..225039646,5	MCF-7	breast:
2	chr1:224700475..224701243-chr1:225038899..225039835,3	MCF-7	breast:
3	chr1:224888426..224889670-chr1:225038968..225039823,3	K562	blood:
4	chr1:224969277..224969796-chr1:225038870..225039554,2	MCF-7	breast:
5	chr1:224701135..224702071-chr1:225038782..225040015,6	K562	blood:
6	chr1:224828694..224829292-chr1:225039053..225039774,2	MCF-7	breast:
7	chr1:224701549..224702083-chr1:225038942..225039865,2	MCF-7	breast:
8	chr1:224831973..224833573-chr1:225038934..225041311,18	MCF-7	breast:
9	chr1:225004248..225005816-chr1:225039220..225040837,2	MCF-7	breast:
10	chr1:225037838..225040570-chr1:225044190..225046369,2	MCF-7	breast:
11	chr1:225038859..225040446-chr1:225045344..225047450,2	MCF-7	breast:
12	chr1:224861153..224861782-chr1:225038916..225039745,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143786	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10399821	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10399941	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10495231	0.81[ASN][1000 genomes]
rs10799282	0.96[ASN][1000 genomes]
rs10799283	0.96[ASN][1000 genomes]
rs10915733	1.00[ASN][1000 genomes]
rs10915743	0.96[ASN][1000 genomes]
rs10915744	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10915745	0.96[ASN][1000 genomes]
rs10915747	0.89[ASN][1000 genomes]
rs10915748	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915749	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915750	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915751	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915757	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915758	0.89[ASN][1000 genomes]
rs10915761	0.81[ASN][1000 genomes]
rs10915762	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10915763	0.81[ASN][1000 genomes]
rs11487461	0.96[ASN][1000 genomes]
rs12060676	0.96[ASN][1000 genomes]
rs12061172	0.81[ASN][1000 genomes]
rs12061874	0.82[ASN][1000 genomes]
rs12068731	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12068939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12071453	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12072713	0.89[ASN][1000 genomes]
rs12073050	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12074130	0.89[ASN][1000 genomes]
rs12077191	1.00[ASN][1000 genomes]
rs12082397	0.89[ASN][1000 genomes]
rs12086122	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12086373	0.89[ASN][1000 genomes]
rs12088836	0.81[ASN][1000 genomes]
rs12090519	0.96[ASN][1000 genomes]
rs12093086	0.89[ASN][1000 genomes]
rs12093545	0.89[ASN][1000 genomes]
rs12095812	0.89[ASN][1000 genomes]
rs12095841	0.96[ASN][1000 genomes]
rs12097532	0.96[ASN][1000 genomes]
rs12097577	0.96[ASN][1000 genomes]
rs1482278	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16858094	0.96[ASN][1000 genomes]
rs16858965	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2244108	0.96[ASN][1000 genomes]
rs2244109	0.96[ASN][1000 genomes]
rs2244198	0.96[ASN][1000 genomes]
rs2254430	0.96[ASN][1000 genomes]
rs2406099	0.96[ASN][1000 genomes]
rs2449279	0.81[ASN][1000 genomes]
rs2449305	0.81[ASN][1000 genomes]
rs2449306	0.81[ASN][1000 genomes]
rs2456344	0.81[ASN][1000 genomes]
rs2456350	0.81[ASN][1000 genomes]
rs2456354	0.81[ASN][1000 genomes]
rs2501103	0.81[ASN][1000 genomes]
rs2662910	0.96[ASN][1000 genomes]
rs2662911	0.96[ASN][1000 genomes]
rs2662913	0.96[ASN][1000 genomes]
rs2802546	0.96[ASN][1000 genomes]
rs2802547	0.83[ASN][1000 genomes]
rs2802567	0.96[ASN][1000 genomes]
rs2802736	0.96[ASN][1000 genomes]
rs28510743	0.96[ASN][1000 genomes]
rs28673436	0.96[ASN][1000 genomes]
rs4256778	0.96[ASN][1000 genomes]
rs55708629	0.81[ASN][1000 genomes]
rs56302122	0.81[ASN][1000 genomes]
rs59318794	0.96[ASN][1000 genomes]
rs60619295	0.96[ASN][1000 genomes]
rs6662177	0.81[ASN][1000 genomes]
rs6680233	0.81[ASN][1000 genomes]
rs6689287	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6694400	0.96[ASN][1000 genomes]
rs6700281	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs74146611	0.81[ASN][1000 genomes]
rs74149417	0.96[ASN][1000 genomes]
rs74149420	0.96[ASN][1000 genomes]
rs74149426	0.89[ASN][1000 genomes]
rs74149428	0.89[ASN][1000 genomes]
rs74149429	0.85[ASN][1000 genomes]
rs74149436	0.81[ASN][1000 genomes]
rs7527885	0.85[CHB][hapmap];0.89[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225034800-225039400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:225034800-225039400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:225038600-225040000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:225038600-225040600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:225038800-225039800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:225038800-225040800	Enhancers	Pancreas	Pancrea
7	chr1:225038800-225041200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:225039000-225042000	Enhancers	Dnd41	blood
9	chr1:225039200-225040200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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