Variant report

Variant	rs12070923
Chromosome Location	chr1:92865174-92865175
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPAP2-1	chr1:92864531-92867613	ENSG00000261311.1
2	lnc-RPAP2-1	chr1:92864531-92867614	NONHSAT004455

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10399671	0.84[AFR][1000 genomes]
rs11164423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11166542	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075243	1.00[CEU][hapmap]
rs12078746	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090761	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12098095	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12563400	1.00[CEU][hapmap]
rs12564911	1.00[CEU][hapmap]
rs12565259	1.00[CEU][hapmap]
rs12566527	1.00[CEU][hapmap]
rs17131621	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131632	0.85[AFR][1000 genomes]
rs17131636	1.00[CEU][hapmap]
rs1819256	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4617457	1.00[EUR][1000 genomes]
rs55993081	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56112620	0.91[EUR][1000 genomes]
rs56665661	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57992264	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142139	0.83[AMR][1000 genomes]
rs6603970	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6662381	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6662565	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6671543	0.83[AMR][1000 genomes]
rs6672838	1.00[CEU][hapmap]
rs6679419	0.91[EUR][1000 genomes]
rs6681027	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6683456	0.84[AFR][1000 genomes]
rs6694248	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6695475	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs72958703	0.91[EUR][1000 genomes]
rs72958746	0.83[AMR][1000 genomes]
rs72958774	0.83[AMR][1000 genomes]
rs72958796	0.83[AMR][1000 genomes]
rs72960815	0.83[AMR][1000 genomes]
rs72960831	0.88[AMR][1000 genomes]
rs72960835	0.88[AMR][1000 genomes]
rs72960860	0.88[AMR][1000 genomes]
rs72960870	0.88[AMR][1000 genomes]
rs72960872	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7513631	0.88[AMR][1000 genomes]
rs7519603	1.00[CEU][hapmap]
rs7520555	1.00[CEU][hapmap]
rs7520675	0.83[AMR][1000 genomes]
rs7522789	0.91[EUR][1000 genomes]
rs7529971	1.00[CEU][hapmap]
rs7535171	1.00[CEU][hapmap]
rs7535181	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7546528	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92863000-92865200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:92863200-92874400	Weak transcription	Thymus	Thymus
3	chr1:92864000-92865200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:92864000-92865200	Enhancers	GM12878-XiMat	blood
5	chr1:92864000-92865800	Enhancers	Dnd41	blood
6	chr1:92864400-92865200	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:92865000-92865200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:92865000-92865400	Weak transcription	Fetal Thymus	thymus

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