The 2.0 version of rSNPBase

Variant report

Variant rs12070983
Chromosome Location chr1:220373777-220373778
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220305400-220376600 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr1:220325000-220398400 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:220330800-220378600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:220345400-220391400 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr1:220348000-220386800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr1:220350000-220386200 Strong transcription Primary T helper cells fromperipheralblood blood
7 chr1:220350600-220387800 Weak transcription Stomach Mucosa stomach
8 chr1:220350800-220378800 Weak transcription Pancreas Pancrea
9 chr1:220353200-220386600 Strong transcription HUES64 Cell Line embryonic stem cell
10 chr1:220353800-220386400 Strong transcription iPS-20b Cell Line embryonic stem cell
11 chr1:220354400-220375000 Strong transcription GM12878-XiMat blood
12 chr1:220354400-220386800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:220355200-220374000 Weak transcription Brain Germinal Matrix brain
14 chr1:220355400-220374000 Weak transcription Right Ventricle heart
15 chr1:220355400-220378600 Weak transcription Gastric stomach
16 chr1:220358000-220376000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:220358000-220381600 Strong transcription HUES48 Cell Line embryonic stem cell
18 chr1:220358000-220382000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:220358400-220377600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr1:220358600-220385800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:220359000-220385000 Strong transcription Liver Liver
22 chr1:220359200-220386000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:220359400-220376600 Strong transcription Rectal Mucosa Donor 29 rectum
24 chr1:220359400-220377000 Strong transcription Breast Myoepithelial Primary Cells Breast
25 chr1:220359400-220385800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr1:220359400-220386800 Strong transcription Cortex derived primary cultured neurospheres brain
27 chr1:220359600-220378400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:220360200-220376400 Strong transcription Primary B cells from peripheral blood blood
29 chr1:220362800-220378600 Weak transcription Small Intestine intestine
30 chr1:220363400-220374800 Strong transcription Rectal Mucosa Donor 31 rectum
31 chr1:220365400-220374200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr1:220365400-220374800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr1:220366000-220378600 Weak transcription Spleen Spleen
34 chr1:220366200-220373800 Weak transcription Brain Cingulate Gyrus brain
35 chr1:220366200-220374200 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr1:220366200-220378200 Weak transcription A549 lung
37 chr1:220366200-220378600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr1:220366200-220392000 Weak transcription Brain Angular Gyrus brain
39 chr1:220366400-220373800 Weak transcription Colon Smooth Muscle Colon
40 chr1:220366400-220374000 Weak transcription Thymus Thymus
41 chr1:220366400-220378600 Weak transcription Brain Substantia Nigra brain
42 chr1:220366400-220379800 Weak transcription Esophagus oesophagus
43 chr1:220366600-220374200 Weak transcription Brain Anterior Caudate brain
44 chr1:220366600-220378400 Weak transcription iPS-15b Cell Line embryonic stem cell
45 chr1:220366600-220378400 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr1:220366600-220378400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:220366600-220378400 Weak transcription Hela-S3 cervix
48 chr1:220366600-220378600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr1:220366800-220374000 Weak transcription Brain Hippocampus Middle brain
50 chr1:220366800-220374200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015