Variant report

Variant	rs12071559
Chromosome Location	chr1:221615879-221615880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11118693	1.00[AMR][1000 genomes]
rs11118695	1.00[AMR][1000 genomes]
rs11118697	1.00[AMR][1000 genomes]
rs11118720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11118752	1.00[AMR][1000 genomes]
rs12058952	1.00[AMR][1000 genomes]
rs12064948	1.00[AMR][1000 genomes]
rs12065046	1.00[AMR][1000 genomes]
rs12070831	1.00[AMR][1000 genomes]
rs12075523	1.00[AMR][1000 genomes]
rs12077254	1.00[AMR][1000 genomes]
rs12077976	1.00[AMR][1000 genomes]
rs12085787	1.00[AMR][1000 genomes]
rs12086226	1.00[AMR][1000 genomes]
rs12087035	1.00[AMR][1000 genomes]
rs12087664	1.00[AMR][1000 genomes]
rs12089533	1.00[AMR][1000 genomes]
rs12095681	1.00[AMR][1000 genomes]
rs57185653	1.00[AMR][1000 genomes]
rs60434045	1.00[AMR][1000 genomes]
rs74144265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74144283	1.00[AMR][1000 genomes]
rs74144295	1.00[AMR][1000 genomes]
rs74145351	1.00[AMR][1000 genomes]
rs74145380	1.00[AMR][1000 genomes]
rs74146103	1.00[AMR][1000 genomes]
rs9943267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221613600-221616000	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr1:221614000-221616200	Enhancers	Brain Substantia Nigra	brain
3	chr1:221614000-221616200	Enhancers	Fetal Lung	lung
4	chr1:221614800-221617800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:221614800-221621200	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:221615000-221617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:221615200-221617400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:221615200-221617600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:221615600-221617400	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:221615600-221635000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:221615800-221616000	Enhancers	Brain Hippocampus Middle	brain
12	chr1:221615800-221616200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:221615800-221620200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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