Variant report

Variant	rs12071874
Chromosome Location	chr1:211372649-211372650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210545612..210547393-chr1:211371347..211373916,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11119665	1.00[EUR][1000 genomes]
rs11119700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060095	1.00[AMR][1000 genomes]
rs12061710	1.00[EUR][1000 genomes]
rs12062424	1.00[EUR][1000 genomes]
rs12063183	1.00[EUR][1000 genomes]
rs12063554	1.00[EUR][1000 genomes]
rs12064954	1.00[EUR][1000 genomes]
rs12065044	1.00[AMR][1000 genomes]
rs12065047	1.00[EUR][1000 genomes]
rs12067738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12068018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12069230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070528	1.00[EUR][1000 genomes]
rs12073144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076586	1.00[EUR][1000 genomes]
rs12078498	1.00[EUR][1000 genomes]
rs12079263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079934	1.00[EUR][1000 genomes]
rs12084637	1.00[EUR][1000 genomes]
rs12086827	1.00[EUR][1000 genomes]
rs12089737	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090848	1.00[AFR][1000 genomes]
rs12096590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12724746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57004496	1.00[AMR][1000 genomes]
rs60471497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60789444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073474	1.00[AMR][1000 genomes]
rs73073478	1.00[EUR][1000 genomes]
rs73073488	1.00[EUR][1000 genomes]
rs73075406	1.00[AMR][1000 genomes]
rs73075420	1.00[EUR][1000 genomes]
rs73075431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075455	1.00[EUR][1000 genomes]
rs73075457	1.00[EUR][1000 genomes]
rs73075496	1.00[EUR][1000 genomes]
rs73077469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74157510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547391	1.00[EUR][1000 genomes]
rs7554031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806574	chr1:211369721-211383129	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1808906	chr1:211369721-211383129	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211370400-211373000	Enhancers	HMEC	breast
2	chr1:211371400-211373000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:211372200-211373200	Weak transcription	A549	lung
4	chr1:211372400-211374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:211372600-211373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211372600-211377200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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