Variant report
| Variant | rs12072778 |
|---|---|
| Chromosome Location | chr1:211380500-211380501 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr1:211380371-211380523 | Hela-S3 | cervix: | n/a | n/a |
| 2 | POLR2A | chr1:211380373-211380712 | MCF-7 | breast: | n/a | n/a |
| 3 | POLR2A | chr1:211380433-211380554 | ProgFib | skin: | n/a | n/a |
| 4 | POLR2A | chr1:211380390-211380507 | A549 | lung: | n/a | n/a |
| 5 | POLR2A | chr1:211380376-211380537 | GM12878 | blood: | n/a | n/a |
| 6 | POLR2A | chr1:211380430-211380609 | MCF-7 | breast: | n/a | n/a |
| 7 | POLR2A | chr1:211380432-211380590 | MCF-7 | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226986 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11119706 | 0.96[EUR][1000 genomes] |
| rs12043438 | 0.84[EUR][1000 genomes] |
| rs12063878 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3111241 | 0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3111242 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3111247 | 0.98[EUR][1000 genomes] |
| rs3111248 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3111250 | 0.91[EUR][1000 genomes] |
| rs3111254 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3111256 | 0.81[EUR][1000 genomes] |
| rs3120784 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3125828 | 0.92[EUR][1000 genomes] |
| rs3125829 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3125834 | 0.98[EUR][1000 genomes] |
| rs3125840 | 0.92[AFR][1000 genomes] |
| rs3125841 | 0.87[AFR][1000 genomes] |
| rs4396171 | 0.85[EUR][1000 genomes] |
| rs61218213 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61737773 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1806574 | chr1:211369721-211383129 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1808906 | chr1:211369721-211383129 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv945277 | chr1:211377389-211382878 | Enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
