Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:195720981..195722711-chr1:195730556..195732740,2	K562	blood:
2	chr1:195728301..195731398-chr1:195733712..195736941,3	MCF-7	breast:
3	chr1:195728899..195731213-chr1:195731741..195733671,2	K562	blood:
4	chr1:195729478..195731927-chr1:195733670..195735429,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10494729	0.83[EUR][1000 genomes]
rs10921905	0.84[EUR][1000 genomes]
rs11807635	0.84[EUR][1000 genomes]
rs11810167	0.86[EUR][1000 genomes]
rs12029946	0.83[EUR][1000 genomes]
rs12030394	0.87[EUR][1000 genomes]
rs12037920	0.84[EUR][1000 genomes]
rs12038958	0.82[EUR][1000 genomes]
rs12042500	0.84[EUR][1000 genomes]
rs12042815	0.86[EUR][1000 genomes]
rs12045875	0.84[EUR][1000 genomes]
rs12046609	0.83[EUR][1000 genomes]
rs12048401	0.86[EUR][1000 genomes]
rs12073625	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085765	0.81[ASN][1000 genomes]
rs2104875	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60298660	0.88[EUR][1000 genomes]
rs66471251	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734141	0.83[EUR][1000 genomes]
rs72734147	0.81[EUR][1000 genomes]
rs72734167	0.86[EUR][1000 genomes]
rs72736123	0.88[EUR][1000 genomes]
rs72736141	0.93[EUR][1000 genomes]
rs72736142	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876716	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195730600-195732800	Weak transcription	Hela-S3	cervix

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