Variant report

Variant	rs12077673
Chromosome Location	chr1:195733098-195733099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10921920	1.00[AMR][1000 genomes]
rs12057377	1.00[AMR][1000 genomes]
rs12058845	1.00[AMR][1000 genomes]
rs12065480	1.00[AMR][1000 genomes]
rs12065832	1.00[AMR][1000 genomes]
rs12070909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071542	1.00[AMR][1000 genomes]
rs12074439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090999	1.00[AMR][1000 genomes]
rs12097767	1.00[AMR][1000 genomes]
rs28473187	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195732200-195733200	Active TSS	A549	lung
2	chr1:195732200-195733400	Active TSS	K562	blood
3	chr1:195732400-195733200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:195732400-195733200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:195732400-195733200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr1:195732400-195733200	Active TSS	HepG2	liver
7	chr1:195732800-195733200	Flanking Active TSS	Hela-S3	cervix
8	chr1:195733000-195733200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:195733000-195733400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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