Variant report

Variant	rs12078068
Chromosome Location	chr1:210644990-210644991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11119503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119505	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130471	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135780	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60950440	1.00[ASN][1000 genomes]
rs72747454	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs742561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210626200-210650000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:210631000-210653800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:210636400-210646000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
5	chr1:210640000-210650600	Weak transcription	Left Ventricle	heart
6	chr1:210640000-210660400	Weak transcription	Aorta	Aorta
7	chr1:210640400-210648400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:210643600-210649000	Weak transcription	HSMMtube	muscle
10	chr1:210644000-210646000	Strong transcription	HSMM	muscle
11	chr1:210644200-210645000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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