Variant report

Variant	rs12078392
Chromosome Location	chr1:152364383-152364384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152358713..152362980-chr1:152363568..152366676,4	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11204983	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12057680	1.00[EUR][1000 genomes]
rs12060296	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12066296	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12067755	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12083959	1.00[EUR][1000 genomes]
rs16834174	1.00[EUR][1000 genomes]
rs1858481	1.00[EUR][1000 genomes]
rs28655434	1.00[EUR][1000 genomes]
rs3120654	1.00[EUR][1000 genomes]
rs3126087	1.00[EUR][1000 genomes]
rs3126093	1.00[EUR][1000 genomes]
rs3134871	1.00[EUR][1000 genomes]
rs56106510	1.00[EUR][1000 genomes]
rs56244386	1.00[EUR][1000 genomes]
rs566973	1.00[EUR][1000 genomes]
rs57272962	1.00[EUR][1000 genomes]
rs57934636	1.00[EUR][1000 genomes]
rs58788896	1.00[EUR][1000 genomes]
rs58823849	1.00[EUR][1000 genomes]
rs58935238	1.00[EUR][1000 genomes]
rs60095860	1.00[EUR][1000 genomes]
rs60179982	1.00[EUR][1000 genomes]
rs60709044	1.00[EUR][1000 genomes]
rs60963018	1.00[EUR][1000 genomes]
rs61230786	1.00[EUR][1000 genomes]
rs73003080	1.00[EUR][1000 genomes]
rs73003789	1.00[EUR][1000 genomes]
rs73004841	1.00[EUR][1000 genomes]
rs73004845	1.00[EUR][1000 genomes]
rs73004848	1.00[EUR][1000 genomes]
rs73004856	1.00[EUR][1000 genomes]
rs73004882	1.00[EUR][1000 genomes]
rs73004888	1.00[EUR][1000 genomes]
rs73006958	1.00[EUR][1000 genomes]
rs73006962	1.00[EUR][1000 genomes]
rs733439	1.00[EUR][1000 genomes]
rs74127885	1.00[EUR][1000 genomes]
rs74127887	1.00[EUR][1000 genomes]
rs74127894	1.00[EUR][1000 genomes]
rs74127895	1.00[EUR][1000 genomes]
rs74127917	1.00[EUR][1000 genomes]
rs74127918	1.00[EUR][1000 genomes]
rs74128280	1.00[EUR][1000 genomes]
rs74129414	1.00[EUR][1000 genomes]
rs74129429	1.00[EUR][1000 genomes]
rs74129447	1.00[EUR][1000 genomes]
rs74129458	1.00[EUR][1000 genomes]
rs74129459	1.00[EUR][1000 genomes]
rs74129463	1.00[EUR][1000 genomes]
rs74129464	1.00[EUR][1000 genomes]
rs74129466	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152363800-152368000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:152363800-152368200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:152363800-152368200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:152364000-152365000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:152364000-152366600	Enhancers	NHEK	skin
6	chr1:152364200-152364600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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