Variant report

Variant	rs12078404
Chromosome Location	chr1:172883921-172883922
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172882184..172884117-chr1:172901661..172903834,2	MCF-7	breast:

rs_ID	r²[population]
rs12060919	1.00[YRI][hapmap]
rs12064754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070166	1.00[AMR][1000 genomes]
rs12070442	1.00[AMR][1000 genomes]
rs12070646	0.84[AFR][1000 genomes]
rs12081864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097028	1.00[AMR][1000 genomes]
rs58337949	1.00[AMR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172879400-172884200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172882200-172885800	Weak transcription	Aorta	Aorta
3	chr1:172882600-172885200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:172882800-172889400	Enhancers	HUVEC	blood vessel
5	chr1:172883000-172884000	Weak transcription	HSMM	muscle
6	chr1:172883000-172884400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:172883000-172884400	Weak transcription	NHEK	skin
8	chr1:172883000-172889600	Enhancers	NHLF	lung
9	chr1:172883200-172884600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:172883200-172885000	Enhancers	Colon Smooth Muscle	Colon
11	chr1:172883400-172884000	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:172883400-172884400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:172883400-172884600	Enhancers	Fetal Stomach	stomach
14	chr1:172883400-172884800	Enhancers	Rectal Smooth Muscle	rectum
15	chr1:172883400-172888200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:172883400-172888400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr1:172883400-172889200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:172883400-172889400	Enhancers	NHDF-Ad	bronchial
19	chr1:172883600-172884400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr1:172883600-172884800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:172883600-172885000	Enhancers	NH-A	brain
22	chr1:172883600-172885200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:172883600-172885400	Enhancers	Stomach Smooth Muscle	stomach
24	chr1:172883600-172886600	Enhancers	A549	lung
25	chr1:172883600-172886800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:172883600-172887000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr1:172883600-172888200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:172883600-172888200	Enhancers	Osteobl	bone
29	chr1:172883600-172889400	Enhancers	HMEC	breast
30	chr1:172883600-172890400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:172883800-172884400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr1:172883800-172886400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:172883800-172890600	Enhancers	HSMMtube	muscle

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