Variant report

Variant	rs12079808
Chromosome Location	chr1:225039055-225039056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:224888278..224889586-chr1:225038704..225039646,5	MCF-7	breast:
2	chr1:224700475..224701243-chr1:225038899..225039835,3	MCF-7	breast:
3	chr1:224888426..224889670-chr1:225038968..225039823,3	K562	blood:
4	chr1:224969277..224969796-chr1:225038870..225039554,2	MCF-7	breast:
5	chr1:224701135..224702071-chr1:225038782..225040015,6	K562	blood:
6	chr1:224828694..224829292-chr1:225039053..225039774,2	MCF-7	breast:
7	chr1:224701549..224702083-chr1:225038942..225039865,2	MCF-7	breast:
8	chr1:224831973..224833573-chr1:225038934..225041311,18	MCF-7	breast:
9	chr1:225037838..225040570-chr1:225044190..225046369,2	MCF-7	breast:
10	chr1:225038859..225040446-chr1:225045344..225047450,2	MCF-7	breast:
11	chr1:224861153..224861782-chr1:225038916..225039745,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143786	Chromatin interaction

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10399959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1078794	1.00[EUR][1000 genomes]
rs10915724	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10915732	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086802	1.00[EUR][1000 genomes]
rs12097593	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376360	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1395115	1.00[EUR][1000 genomes]
rs1580956	1.00[EUR][1000 genomes]
rs16854034	1.00[EUR][1000 genomes]
rs16854471	1.00[EUR][1000 genomes]
rs16855953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16856828	1.00[EUR][1000 genomes]
rs2060556	1.00[EUR][1000 genomes]
rs2244108	1.00[EUR][1000 genomes]
rs2244109	1.00[EUR][1000 genomes]
rs2244198	1.00[EUR][1000 genomes]
rs2245097	1.00[EUR][1000 genomes]
rs2254430	1.00[EUR][1000 genomes]
rs2449262	1.00[EUR][1000 genomes]
rs2449264	1.00[EUR][1000 genomes]
rs2449265	1.00[EUR][1000 genomes]
rs2449267	1.00[EUR][1000 genomes]
rs2449268	1.00[EUR][1000 genomes]
rs2449270	1.00[EUR][1000 genomes]
rs2449271	1.00[EUR][1000 genomes]
rs2449272	1.00[EUR][1000 genomes]
rs2449275	1.00[EUR][1000 genomes]
rs2449277	1.00[EUR][1000 genomes]
rs2449278	1.00[EUR][1000 genomes]
rs2449279	1.00[EUR][1000 genomes]
rs2449283	1.00[EUR][1000 genomes]
rs2449284	1.00[EUR][1000 genomes]
rs2449286	1.00[EUR][1000 genomes]
rs2449288	1.00[EUR][1000 genomes]
rs2449289	1.00[EUR][1000 genomes]
rs2449290	1.00[EUR][1000 genomes]
rs2449294	1.00[EUR][1000 genomes]
rs2449305	1.00[EUR][1000 genomes]
rs2449306	1.00[EUR][1000 genomes]
rs2449309	1.00[EUR][1000 genomes]
rs2449312	1.00[EUR][1000 genomes]
rs2449314	1.00[EUR][1000 genomes]
rs2449317	1.00[EUR][1000 genomes]
rs2449319	1.00[EUR][1000 genomes]
rs2449321	1.00[EUR][1000 genomes]
rs2449323	1.00[EUR][1000 genomes]
rs2449324	1.00[EUR][1000 genomes]
rs2456338	1.00[EUR][1000 genomes]
rs2456343	1.00[EUR][1000 genomes]
rs2456344	1.00[EUR][1000 genomes]
rs2456346	1.00[EUR][1000 genomes]
rs2456350	1.00[EUR][1000 genomes]
rs2456352	1.00[EUR][1000 genomes]
rs2456354	1.00[EUR][1000 genomes]
rs2489299	1.00[EUR][1000 genomes]
rs2489305	1.00[EUR][1000 genomes]
rs2489307	1.00[EUR][1000 genomes]
rs2489309	1.00[EUR][1000 genomes]
rs2489315	1.00[EUR][1000 genomes]
rs2489316	1.00[EUR][1000 genomes]
rs2489317	1.00[EUR][1000 genomes]
rs2489318	1.00[EUR][1000 genomes]
rs2489319	1.00[EUR][1000 genomes]
rs2489321	1.00[EUR][1000 genomes]
rs2489323	1.00[EUR][1000 genomes]
rs2489326	1.00[EUR][1000 genomes]
rs2489329	1.00[EUR][1000 genomes]
rs2489331	1.00[EUR][1000 genomes]
rs2489333	1.00[EUR][1000 genomes]
rs2489334	1.00[EUR][1000 genomes]
rs2489335	1.00[EUR][1000 genomes]
rs2489336	1.00[EUR][1000 genomes]
rs2489339	1.00[EUR][1000 genomes]
rs2489340	1.00[EUR][1000 genomes]
rs2489342	1.00[EUR][1000 genomes]
rs2489345	1.00[EUR][1000 genomes]
rs2489347	1.00[EUR][1000 genomes]
rs2489349	1.00[EUR][1000 genomes]
rs2489350	1.00[EUR][1000 genomes]
rs2489351	1.00[EUR][1000 genomes]
rs2489354	1.00[EUR][1000 genomes]
rs2489356	1.00[EUR][1000 genomes]
rs2489357	1.00[EUR][1000 genomes]
rs2489358	1.00[EUR][1000 genomes]
rs2489359	1.00[EUR][1000 genomes]
rs2489360	1.00[EUR][1000 genomes]
rs2501065	1.00[EUR][1000 genomes]
rs2501074	1.00[EUR][1000 genomes]
rs2501076	1.00[EUR][1000 genomes]
rs2501077	1.00[EUR][1000 genomes]
rs2501079	1.00[EUR][1000 genomes]
rs2501088	1.00[EUR][1000 genomes]
rs2501103	1.00[EUR][1000 genomes]
rs2501104	1.00[EUR][1000 genomes]
rs2501112	1.00[EUR][1000 genomes]
rs2501113	1.00[EUR][1000 genomes]
rs2501117	1.00[EUR][1000 genomes]
rs2501121	1.00[EUR][1000 genomes]
rs2501124	1.00[EUR][1000 genomes]
rs2501128	1.00[EUR][1000 genomes]
rs2501136	1.00[EUR][1000 genomes]
rs2501137	1.00[EUR][1000 genomes]
rs2501142	1.00[EUR][1000 genomes]
rs2501144	1.00[EUR][1000 genomes]
rs2501148	1.00[EUR][1000 genomes]
rs2501150	1.00[EUR][1000 genomes]
rs2501152	1.00[EUR][1000 genomes]
rs2501157	1.00[EUR][1000 genomes]
rs2516334	1.00[EUR][1000 genomes]
rs2662910	1.00[EUR][1000 genomes]
rs2662911	1.00[EUR][1000 genomes]
rs2662913	1.00[EUR][1000 genomes]
rs2802546	1.00[EUR][1000 genomes]
rs2802547	1.00[EUR][1000 genomes]
rs2802567	1.00[EUR][1000 genomes]
rs2802736	1.00[EUR][1000 genomes]
rs2929627	1.00[EUR][1000 genomes]
rs2929629	1.00[EUR][1000 genomes]
rs2929632	1.00[EUR][1000 genomes]
rs3102105	1.00[EUR][1000 genomes]
rs4121159	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4256778	1.00[EUR][1000 genomes]
rs4576636	0.84[AFR][1000 genomes]
rs57535083	1.00[EUR][1000 genomes]
rs58205526	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58651151	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58823550	1.00[EUR][1000 genomes]
rs59730608	1.00[EUR][1000 genomes]
rs59839860	1.00[EUR][1000 genomes]
rs60428528	1.00[EUR][1000 genomes]
rs61329501	1.00[EUR][1000 genomes]
rs6426164	1.00[EUR][1000 genomes]
rs6666664	1.00[EUR][1000 genomes]
rs6693680	1.00[EUR][1000 genomes]
rs6694400	1.00[EUR][1000 genomes]
rs6698293	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537947	1.00[EUR][1000 genomes]
rs7550589	1.00[EUR][1000 genomes]
rs9426101	1.00[EUR][1000 genomes]
rs9426103	1.00[EUR][1000 genomes]
rs9426104	1.00[EUR][1000 genomes]
rs9426147	1.00[EUR][1000 genomes]
rs9426156	1.00[EUR][1000 genomes]
rs9426159	1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225028600-225039200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:225034800-225039400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:225034800-225039400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:225038600-225040000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:225038600-225040600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:225038800-225039800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:225038800-225040800	Enhancers	Pancreas	Pancrea
8	chr1:225038800-225041200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:225039000-225042000	Enhancers	Dnd41	blood

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