Variant report

Variant rs12080250
Chromosome Location chr1:223959452-223959453
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:223937000-223960000 Weak transcription Thymus Thymus
2 chr1:223941200-223961600 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:223954400-223961800 Weak transcription HepG2 liver
4 chr1:223954800-223964000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:223956600-223960000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
6 chr1:223956600-223960400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr1:223956600-223960800 Strong transcription Primary T helper naive cells from peripheral blood blood
8 chr1:223956600-223962800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:223956600-223963400 Strong transcription Primary T regulatory cells fromperipheralblood blood
10 chr1:223956600-223963600 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr1:223956600-223963600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:223956600-223963800 Strong transcription Primary T cells fromperipheralblood blood
13 chr1:223956600-223967000 Strong transcription Lung lung
14 chr1:223956600-223967200 Strong transcription Colonic Mucosa Colon
15 chr1:223956600-223968400 Strong transcription Fetal Brain Female brain
16 chr1:223956600-223969000 Strong transcription Cortex derived primary cultured neurospheres brain
17 chr1:223956600-223969000 Strong transcription Fetal Stomach stomach
18 chr1:223956600-224004600 Strong transcription Primary monocytes fromperipheralblood blood
19 chr1:223956600-224004600 Strong transcription Monocytes-CD14+_RO01746 blood
20 chr1:223956800-223959600 Strong transcription Primary T killer memory cells from peripheral blood blood
21 chr1:223956800-223963000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr1:223956800-223963200 Strong transcription Primary T helper cells PMA-I stimulated --
23 chr1:223956800-223969000 Strong transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:223956800-223969200 Strong transcription Placenta Placenta
25 chr1:223956800-223974200 Strong transcription Primary T cells from cord blood blood
26 chr1:223956800-223974200 Strong transcription Liver Liver
27 chr1:223957000-223962400 Strong transcription Primary T helper memory cells from peripheral blood 2 blood
28 chr1:223957000-223964000 Strong transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:223957000-223983400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr1:223957200-223965000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr1:223957200-223968000 Strong transcription Brain Germinal Matrix brain
32 chr1:223957200-223968800 Strong transcription Primary T helper cells fromperipheralblood blood
33 chr1:223957200-223972800 Strong transcription Primary B cells from peripheral blood blood
34 chr1:223957400-223960600 Weak transcription Primary neutrophils fromperipheralblood blood
35 chr1:223957400-223960800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:223957400-223962200 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
37 chr1:223957600-223959600 Strong transcription iPS-18 Cell Line embryonic stem cell
38 chr1:223957600-223959600 Strong transcription Fetal Brain Male brain
39 chr1:223957600-223960800 Enhancers Right Atrium heart
40 chr1:223957800-223960200 Weak transcription Fetal Thymus thymus
41 chr1:223957800-223961000 Genic enhancers NHLF lung
42 chr1:223958000-223960800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
43 chr1:223958200-223960800 Genic enhancers Adipose Nuclei Adipose
44 chr1:223958200-223961000 Genic enhancers Stomach Mucosa stomach
45 chr1:223958200-223961200 Weak transcription Psoas Muscle Psoas
46 chr1:223958200-223961400 Weak transcription H1 Cell Line embryonic stem cell
47 chr1:223958200-223962000 Strong transcription Pancreas Pancrea
48 chr1:223958400-223960400 Genic enhancers Duodenum Smooth Muscle Duodenum
49 chr1:223958400-223960800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:223958400-223960800 Genic enhancers NHDF-Ad bronchial

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