Variant report

Variant	rs12080285
Chromosome Location	chr1:160903935-160903936
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr1:160903928-160904420	A549	lung:	n/a	n/a
2	NR3C1	chr1:160903898-160904385	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000233691	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10797087	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10797089	0.82[EUR][1000 genomes]
rs10908809	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10908810	0.86[EUR][1000 genomes]
rs10908811	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10908812	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10908813	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1092415	0.81[ASN][1000 genomes]
rs11265510	0.83[EUR][1000 genomes]
rs11265514	0.86[EUR][1000 genomes]
rs11265516	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11265519	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11587040	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12125065	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12135639	0.85[EUR][1000 genomes]
rs12740520	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1810924	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1855186	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1855187	0.83[EUR][1000 genomes]
rs1930596	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1930598	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2184064	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2225591	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34295669	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3953093	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3953095	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4017453	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4129196	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4656277	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4656282	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4656959	0.83[EUR][1000 genomes]
rs4656964	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6427559	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6674437	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6691868	0.82[EUR][1000 genomes]
rs6694415	0.82[EUR][1000 genomes]
rs6694743	0.87[EUR][1000 genomes]
rs6704490	0.82[EUR][1000 genomes]
rs7414826	0.84[EUR][1000 genomes]
rs7551697	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160899800-160905400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links